From 481eae5ef2b89502bab3b5a81f24ad6a7635a924 Mon Sep 17 00:00:00 2001
From: Fontrodona Nicolas <nicolas.fontrodona@ens-lyon.fr>
Date: Tue, 10 Mar 2020 11:15:17 +0100
Subject: [PATCH] src/db_utils/projects_metadata/get_fill_metadata.py:
modification in launch_pmagicGEO_script function: we call
subprocess.check_call instead of subprocess.check_output
---
src/db_utils/projects_metadata/get_fill_metadata.py | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/src/db_utils/projects_metadata/get_fill_metadata.py b/src/db_utils/projects_metadata/get_fill_metadata.py
index eba211a2..537e479d 100644
--- a/src/db_utils/projects_metadata/get_fill_metadata.py
+++ b/src/db_utils/projects_metadata/get_fill_metadata.py
@@ -24,9 +24,9 @@ def launch_pmagicGEO_script() -> None:
that we want to study.
"""
- subprocess.check_output(f"PmagicGEO.pl -i {Config.geo_id_file} "
- f"-p {Config.output} " f"-o {Config.outfile}",
- shell=True, stderr=subprocess.STDOUT)
+ subprocess.check_call(f"PmagicGEO.pl -i {Config.geo_id_file} "
+ f"-p {Config.output} " f"-o {Config.outfile}",
+ shell=True, stderr=subprocess.STDOUT)
def load_metadata() -> pd.DataFrame:
--
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