diff --git a/src/db_utils/projects_metadata/get_fill_metadata.py b/src/db_utils/projects_metadata/get_fill_metadata.py index eba211a2f74b64b1f8e647db1f0b39d9e255e146..537e479d699005ab2c80cd3b65677de5888f44e2 100644 --- a/src/db_utils/projects_metadata/get_fill_metadata.py +++ b/src/db_utils/projects_metadata/get_fill_metadata.py @@ -24,9 +24,9 @@ def launch_pmagicGEO_script() -> None: that we want to study. """ - subprocess.check_output(f"PmagicGEO.pl -i {Config.geo_id_file} " - f"-p {Config.output} " f"-o {Config.outfile}", - shell=True, stderr=subprocess.STDOUT) + subprocess.check_call(f"PmagicGEO.pl -i {Config.geo_id_file} " + f"-p {Config.output} " f"-o {Config.outfile}", + shell=True, stderr=subprocess.STDOUT) def load_metadata() -> pd.DataFrame: