From 1dda100c4b3f2abc03470d60676e4fd2419a3500 Mon Sep 17 00:00:00 2001
From: Fontrodona Nicolas <nicolas.fontrodona@ens-lyon.fr>
Date: Wed, 4 Mar 2020 09:16:52 +0100
Subject: [PATCH] src/db_utils/config.py: deletion of unused import and
deletion of comment lines
---
src/db_utils/config.py | 11 -----------
1 file changed, 11 deletions(-)
diff --git a/src/db_utils/config.py b/src/db_utils/config.py
index 107f80ff..8f9d60ba 100755
--- a/src/db_utils/config.py
+++ b/src/db_utils/config.py
@@ -7,9 +7,6 @@ Description: Configuration class
"""
from pathlib import Path
-from typing import Dict, Any
-import logging
-import logging.config
class Config:
@@ -20,12 +17,4 @@ class Config:
tables = ["cin_gene", "cin_exon", "cin_frequency", "cin_interaction"]
bed_exon = Path(__file__).parents[2] / 'data' / 'bed' / 'exon.bed'
bed_gene = Path(__file__).parents[2] / 'data' / 'bed' / 'gene.bed'
- # bed_orf = Path(__file__).parents[1] / "data" / "exon_orf.bed"
- # bed_exon_freq = Path(__file__).parents[1] / "data" / "exon_freq.bed"
- # output = Path(__file__).parents[2] / "results"
- # exon_intern = Path(__file__).parents[1] / "data" / "exon_intern.bed"
- # ctrl_exon_file = output / "CTRL_exons.txt"
- # exon_file = output / "exons.txt"
- # gene_file = Path(__file__).parents[1] / "data" / "genes.csv"
- # frequency_file = output / "frequency.txt"
--
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