From 1bb5612d2f443b1cacb3887ddfb7e79d0974f74f Mon Sep 17 00:00:00 2001
From: Fontrodona Nicolas <nicolas.fontrodona@ens-lyon.fr>
Date: Tue, 19 Jan 2021 11:51:25 +0100
Subject: [PATCH] src/find_interaction_cluster/__main__.py: add display_size
parameter
---
src/find_interaction_cluster/__main__.py | 10 +++++++---
1 file changed, 7 insertions(+), 3 deletions(-)
diff --git a/src/find_interaction_cluster/__main__.py b/src/find_interaction_cluster/__main__.py
index 21750ae9..19361fad 100644
--- a/src/find_interaction_cluster/__main__.py
+++ b/src/find_interaction_cluster/__main__.py
@@ -31,6 +31,7 @@ def launcher(weight: int = 1,
html_fig: bool = False, feature: str = 'exon', region: str = '',
component_type: str = 'nt',
iteration: int = 1000, test_type: str = "lm",
+ display_size: bool = False,
project: str = "GSM1018963_GSM1018964",
logging_level: str = "DISABLE"):
"""
@@ -56,6 +57,8 @@ def launcher(weight: int = 1,
(only used is global_weight = 0).
:param test_type: The king of test to perform for frequency analysis. \
(default 'lm') (choose from 'lm', 'permutation')
+ :param display_size: True to display the size of the community. \
+ False to display nothing. (default False)
:param ps: The number of processes to use
"""
logging_def(ConfigGraph.community_folder, __file__, logging_level)
@@ -67,11 +70,12 @@ def launcher(weight: int = 1,
install_hipmcl("INFO")
multiple_community_launcher(weight, global_weight, project, same_gene,
html_fig, feature, logging_level)
- multiple_stat_launcher(ps, weight, global_weight, project, same_gene,
- feature, logging_level)
+ # multiple_stat_launcher(ps, weight, global_weight, project, same_gene,
+ # feature, logging_level)
multiple_nt_lm_launcher(ps, weight, global_weight, project,
same_gene, feature, region, component_type,
- test_type, iteration, logging_level)
+ test_type, iteration, display_size,
+ logging_level=logging_level)
if feature == "gene":
# ppi_stat_launcher(weight, global_weight, project, same_gene,
# ConfigGraph.ppi_threshold, iteration,
--
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