diff --git a/src/find_interaction_cluster/__main__.py b/src/find_interaction_cluster/__main__.py index 21750ae994f3bd33705c9865f70e78fd28d55729..19361fad8859cd421a81b1ed8d46562dabaed614 100644 --- a/src/find_interaction_cluster/__main__.py +++ b/src/find_interaction_cluster/__main__.py @@ -31,6 +31,7 @@ def launcher(weight: int = 1, html_fig: bool = False, feature: str = 'exon', region: str = '', component_type: str = 'nt', iteration: int = 1000, test_type: str = "lm", + display_size: bool = False, project: str = "GSM1018963_GSM1018964", logging_level: str = "DISABLE"): """ @@ -56,6 +57,8 @@ def launcher(weight: int = 1, (only used is global_weight = 0). :param test_type: The king of test to perform for frequency analysis. \ (default 'lm') (choose from 'lm', 'permutation') + :param display_size: True to display the size of the community. \ + False to display nothing. (default False) :param ps: The number of processes to use """ logging_def(ConfigGraph.community_folder, __file__, logging_level) @@ -67,11 +70,12 @@ def launcher(weight: int = 1, install_hipmcl("INFO") multiple_community_launcher(weight, global_weight, project, same_gene, html_fig, feature, logging_level) - multiple_stat_launcher(ps, weight, global_weight, project, same_gene, - feature, logging_level) + # multiple_stat_launcher(ps, weight, global_weight, project, same_gene, + # feature, logging_level) multiple_nt_lm_launcher(ps, weight, global_weight, project, same_gene, feature, region, component_type, - test_type, iteration, logging_level) + test_type, iteration, display_size, + logging_level=logging_level) if feature == "gene": # ppi_stat_launcher(weight, global_weight, project, same_gene, # ConfigGraph.ppi_threshold, iteration,