From 0931ecfc91d59da145e38882570045d9f33283ba Mon Sep 17 00:00:00 2001
From: Fontrodona Nicolas <nicolas.fontrodona@ens-lyon.fr>
Date: Thu, 5 Mar 2020 14:28:27 +0100
Subject: [PATCH] src/db_utils/__main__.py: modification of __main__ to fill
the frequency tables
---
src/db_utils/__main__.py | 4 ++++
1 file changed, 4 insertions(+)
diff --git a/src/db_utils/__main__.py b/src/db_utils/__main__.py
index 55599b19..e7b637da 100755
--- a/src/db_utils/__main__.py
+++ b/src/db_utils/__main__.py
@@ -11,6 +11,8 @@ from ..logging_conf import logging_def
from .db_creation import main_create_db
from .fill_exon_n_gene_table import main_fill_exon_n_gene
from .fill_splicing_lore_tables import fill_splicing_lore_data
+from .frequency_scripts.create_n_fill_exon_frequency_file import \
+ fill_frequency_tables
import logging
@@ -25,6 +27,8 @@ def launcher(logging_level: str = "INFO"):
main_fill_exon_n_gene('DISABLE')
logging.info('Filling splicing lore tables')
fill_splicing_lore_data('DISABLE')
+ logging.info('Filling frequency tables')
+ fill_frequency_tables('DISABLE')
launcher(logging_level="DEBUG")
--
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