From debea6589533df0eaa60ff70f72ea4c5d796bbab Mon Sep 17 00:00:00 2001
From: Fontrodona Nicolas <nicolas.fontrodona@ens-lyon.fr>
Date: Fri, 16 Apr 2021 13:49:59 +0200
Subject: [PATCH] src/visu/figure_maker.py: small change in load_bed
---
src/visu/figure_maker.py | 3 ++-
1 file changed, 2 insertions(+), 1 deletion(-)
diff --git a/src/visu/figure_maker.py b/src/visu/figure_maker.py
index 0eb5e66..89101fa 100644
--- a/src/visu/figure_maker.py
+++ b/src/visu/figure_maker.py
@@ -36,8 +36,9 @@ def load_bed(bed: Path, bed_name: str) -> List[List[Union[int, str]]]:
for line in inbed:
if not line.startswith("#"):
cline = line.replace("\n", "").split("\t")
+ my_id = int(cline[3]) if cline[3].isdigit() else cline[3]
list_regions.append([cline[0], int(cline[1]), int(cline[2]),
- int(cline[3]), cline[4], cline[5],
+ my_id, cline[4], cline[5],
bed_name])
return list_regions
--
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