From a5e8bfbb4c148fb29858137e51c88a96d458fc83 Mon Sep 17 00:00:00 2001
From: Fontrodona Nicolas <nicolas.fontrodona@ens-lyon.fr>
Date: Thu, 3 Dec 2020 18:10:46 +0100
Subject: [PATCH] src/bed_handler/get_other_exon_in_same_gene.py: modication of
outpout file name in get_other_exon_in_same_gene
---
src/bed_handler/get_other_exon_in_same_gene.py | 9 +++++----
1 file changed, 5 insertions(+), 4 deletions(-)
diff --git a/src/bed_handler/get_other_exon_in_same_gene.py b/src/bed_handler/get_other_exon_in_same_gene.py
index bdb773b..0b3a225 100644
--- a/src/bed_handler/get_other_exon_in_same_gene.py
+++ b/src/bed_handler/get_other_exon_in_same_gene.py
@@ -172,11 +172,12 @@ def get_other_exon_in_same_gene(bed: str,
final_df = get_final_bed(ctcf_dist, good_exon_df, distance_threshold)
final_df.to_csv(OutputBed.output / outfile, sep="\t", index=False)
gene_df = create_gene_bed4norm(BedConfig.gene_bed, final_df)
- gene_df.to_csv(OutputBed.output / (outfile.replace(".bed", "") +
- "-gene-dup.bed"), sep="\t", index=False)
+ gene_df.to_csv(OutputBed.output / outfile.replace("exon.bed",
+ "gene-dup.bed"),
+ sep="\t", index=False)
gene_df = gene_df.drop_duplicates()
- gene_df.to_csv(OutputBed.output / (outfile.replace(".bed", "") +
- "-gene.bed"), sep="\t", index=False)
+ gene_df.to_csv(OutputBed.output / outfile.replace("exon.bed", "gene.bed"),
+ sep="\t", index=False)
if __name__ == "__main__":
--
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