From 583ad69ea38ca01d9a52ade5d00e593d61dc52dc Mon Sep 17 00:00:00 2001
From: Fontrodona Nicolas <nicolas.fontrodona@ens-lyon.fr>
Date: Mon, 21 Feb 2022 09:34:51 +0100
Subject: [PATCH] src/bed_handler/config.py: Add expressed_genes variable
---
src/bed_handler/config.py | 1 +
1 file changed, 1 insertion(+)
diff --git a/src/bed_handler/config.py b/src/bed_handler/config.py
index f725bc0..6a9a6bf 100644
--- a/src/bed_handler/config.py
+++ b/src/bed_handler/config.py
@@ -32,6 +32,7 @@ class BedConfig:
sipp_vs_ctcf = base / "data" / "Sipp_exon_vs_CTCF.csv"
all_vs_ctcf = base / 'data' / 'All_Exons_vs_CTCF.csv'
exons_vs_ctcf = base / "data" / "All_Exons_vs_CTCF.csv"
+ expressed_genes = base / "data" / "5y_expressed_genes_basemean>5.txt"
bed = OutputBed
size = 5000
--
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