From 4d17cd2337cde11319b35a318a310be81a1dba24 Mon Sep 17 00:00:00 2001
From: Fontrodona Nicolas <nicolas.fontrodona@ens-lyon.fr>
Date: Wed, 4 Nov 2020 15:57:00 +0100
Subject: [PATCH] src/visu/figure_maker.py: removing the creation of a tmp file
to speed up the creation of a figure made on the same input files
---
src/visu/figure_maker.py | 12 ++++--------
1 file changed, 4 insertions(+), 8 deletions(-)
diff --git a/src/visu/figure_maker.py b/src/visu/figure_maker.py
index 2da518f..75676b2 100644
--- a/src/visu/figure_maker.py
+++ b/src/visu/figure_maker.py
@@ -459,14 +459,10 @@ def create_figure(design: Path, bw_folder: Path, region_beds: List[Path],
outfile += f'_file_norm'
outfile += '.txt.gz'
cov_file = output / outfile
- if cov_file.is_file():
- df_cov = pd.read_csv(cov_file, sep="\t", compression='gzip')
- else:
- df_cov = create_full_table(df_exp, regions, nb_bin, environment,
- bw_folder)
- if norm is not None:
- df_cov = bin_normalisation(df_cov, norm, cov_file)
- df_cov.to_csv(cov_file, sep="\t", index=False, compression='gzip')
+ df_cov = create_full_table(df_exp, regions, nb_bin, environment,
+ bw_folder)
+ if norm is not None:
+ df_cov = bin_normalisation(df_cov, norm, cov_file)
ordered_condition = []
for condition in df_exp['condition'].to_list():
if condition not in ordered_condition:
--
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