From 397729a79da2679daaa2a10b10e89c3434621200 Mon Sep 17 00:00:00 2001
From: Fontrodona Nicolas <nicolas.fontrodona@ens-lyon.fr>
Date: Mon, 15 Mar 2021 18:18:54 +0100
Subject: [PATCH] src/gc_content/gc_content.py: modfication of
add_stat_annotation calls in make_gc_barplot
---
src/gc_content/gc_content.py | 16 +++++++++-------
1 file changed, 9 insertions(+), 7 deletions(-)
diff --git a/src/gc_content/gc_content.py b/src/gc_content/gc_content.py
index c517c44..35e025c 100644
--- a/src/gc_content/gc_content.py
+++ b/src/gc_content/gc_content.py
@@ -154,18 +154,20 @@ def make_gc_barplot(df: pd.DataFrame, outfile: Path, environment: int,
add_stat_annotation(g.ax, data=df, x="location", y="gc_content",
hue="region",
loc='inside',
- boxPairList=p_vals,
- linewidth=2, fontsize="medium",
- lineYOffsetAxesCoord=0,
- lineYOffsetToBoxAxesCoord=0.1)
+ box_pair_list=p_vals,
+ linewidth=2, fontsize="xx-small",
+ liney_offset_axes_coord=0.02,
+ liney_offset2box_axes_coord=0.02,
+ line_height_axes_coord=0)
else:
g = sns.catplot(x="region", y="gc_content", data=df,
aspect=1.77, height=12, kind="violin")
add_stat_annotation(g.ax, data=df, x="region", y="gc_content",
loc='inside',
- boxPairList=p_vals,
- linewidth=2, fontsize="medium",
- lineYOffsetToBoxAxesCoord=0.1)
+ box_pair_list=p_vals,
+ linewidth=2, fontsize="xx-small",
+ liney_offset2box_axes_coord=0.1,
+ line_height_axes_coord=0)
g.set_ylabels("GC content")
g.set_xlabels("")
g.fig.subplots_adjust(top=0.9)
--
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