<html><head><meta name="color-scheme" content="light dark"></head><body><pre style="word-wrap: break-word; white-space: pre-wrap;">Bootstrap: docker
From: ubuntu:18.04

%labels
MAINTAINER Laurent Modolo

%post
mkdir -p /sps /pbs /scratch
KALLISTO_VERSION=0.43.1
PACKAGES="curl \
ca-certificates"

apt-get update &amp;&amp; \
apt-get install -y --no-install-recommends ${PACKAGES} &amp;&amp; \
apt-get clean

curl -k -L  https://github.com/pachterlab/kallisto/releases/download/v${KALLISTO_VERSION}/kallisto_linux-v${KALLISTO_VERSION}.tar.gz -o kallisto_linux-v${KALLISTO_VERSION}.tar.gz &amp;&amp; \
tar xzf kallisto_linux-v${KALLISTO_VERSION}.tar.gz &amp;&amp; \
cp kallisto_linux-v${KALLISTO_VERSION}/kallisto /usr/bin &amp;&amp; \
rm -Rf kallisto_linux-v${KALLISTO_VERSION}*

%environment
export KALLISTO_VERSION=0.44.0

%runscript
exec /bin/bash "$@"
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