profiles { docker { docker.temp = 'auto' docker.enabled = true process { withName: adaptor_removal { container = "cutadapt:2.1" cpus = 1 } } } singularity { singularity.enabled = true process { withName: adaptor_removal { container = "file://bin/cutadapt:2.1.img" cpus = 1 } } } psmn { process{ withName: adaptor_removal { beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules" module = "cutadapt/2.1" executor = "sge" clusterOptions = "-cwd -V" cpus = 1 memory = "20GB" time = "12h" queue = 'monointeldeb128' } } } }