# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr> # # SPDX-License-Identifier: AGPL-3.0-or-later FROM ubuntu:20.04 ENV DANPOS_VERSION="2f7f223" ENV TZ=Europe/Paris RUN ln -snf /usr/share/zoneinfo/$TZ /etc/localtime && echo $TZ > /etc/timezone \ && apt update -qq \ && apt install --no-install-recommends software-properties-common -y dirmngr git python \ && wget -qO- https://cloud.r-project.org/bin/linux/ubuntu/marutter_pubkey.asc | tee -a /etc/apt/trusted.gpg.d/cran_ubuntu_key.asc \ && add-apt-repository "deb https://cloud.r-project.org/bin/linux/ubuntu $(lsb_release -cs)-cran40/" RUN apt-get update \ && apt-get install -y r-base=4.0.1 samtools \ && git clone https://github.com/sklasfeld/DANPOS3.git \ && cd DANPOS3 \ && git checkout $DANPOS_VERSION \ && pip install -r requirements.txt \ && chmod +x DANPOS3/*.py ENV PATH="/DANPOS3:${PATH}" CMD [ "bash" ]