diff --git a/src/nf_modules/fastqc/fastqc_paired.config b/src/nf_modules/fastqc/fastqc_paired.config index 08cc9b1b79204a178d9a1bb7880b1eddb7e66935..e6404b8ff41d9520e0f5e4a85f39e77e8ac2bfa4 100644 --- a/src/nf_modules/fastqc/fastqc_paired.config +++ b/src/nf_modules/fastqc/fastqc_paired.config @@ -32,4 +32,19 @@ profiles { } } } + ccin2p3 { + process{ + withName: fastqc_fastq { + beforeScript = "PATH=/sps/lbmc/common/nextflow/src/singularity_modules/fastqc/0.11.5/:/usr/bin:$PATH" + scratch = true + stageInMode = "copy" + stageOutMode = "rsync" + executor = "sge" + clusterOptions = "-P P_lbmc -l os=cl7 -l sps=1 -r n" + cpus = 1 + memory = "10GB" + time = "24h" + } + } + } } diff --git a/src/nf_modules/fastqc/fastqc_single.config b/src/nf_modules/fastqc/fastqc_single.config index 08cc9b1b79204a178d9a1bb7880b1eddb7e66935..e6404b8ff41d9520e0f5e4a85f39e77e8ac2bfa4 100644 --- a/src/nf_modules/fastqc/fastqc_single.config +++ b/src/nf_modules/fastqc/fastqc_single.config @@ -32,4 +32,19 @@ profiles { } } } + ccin2p3 { + process{ + withName: fastqc_fastq { + beforeScript = "PATH=/sps/lbmc/common/nextflow/src/singularity_modules/fastqc/0.11.5/:/usr/bin:$PATH" + scratch = true + stageInMode = "copy" + stageOutMode = "rsync" + executor = "sge" + clusterOptions = "-P P_lbmc -l os=cl7 -l sps=1 -r n" + cpus = 1 + memory = "10GB" + time = "24h" + } + } + } }