From fe2a22ebee4151d1d88ea076d593ffec92e96967 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Mon, 4 Mar 2019 17:32:00 +0100
Subject: [PATCH] samblaster: add singularity files
---
.../samblaster/0.1.24/build.sh | 3 ++
.../samblaster/0.1.24/samblaster.def | 30 +++++++++++++++++++
2 files changed, 33 insertions(+)
create mode 100755 src/singularity_modules/samblaster/0.1.24/build.sh
create mode 100644 src/singularity_modules/samblaster/0.1.24/samblaster.def
diff --git a/src/singularity_modules/samblaster/0.1.24/build.sh b/src/singularity_modules/samblaster/0.1.24/build.sh
new file mode 100755
index 00000000..7e93d79e
--- /dev/null
+++ b/src/singularity_modules/samblaster/0.1.24/build.sh
@@ -0,0 +1,3 @@
+#/bin/sh
+sudo singularity build --force bin/samblaster:0.1.24.sif src/singularity_modules/samblaster/0.1.24/samblaster.def
+singularity sign bin/samblaster:0.1.24.sif
diff --git a/src/singularity_modules/samblaster/0.1.24/samblaster.def b/src/singularity_modules/samblaster/0.1.24/samblaster.def
new file mode 100644
index 00000000..d2abfd55
--- /dev/null
+++ b/src/singularity_modules/samblaster/0.1.24/samblaster.def
@@ -0,0 +1,30 @@
+Bootstrap: docker
+From: ubuntu:18.04
+
+%labels
+MAINTAINER Laurent Modolo
+
+%post
+SAMBLASTER_VERSION=0.1.24
+PACKAGES="curl \
+ca-certificates \
+build-essential \
+zlib1g-dev"
+
+apt-get update && \
+apt-get install -y --no-install-recommends ${PACKAGES} && \
+apt-get clean
+
+curl -k -L https://github.com/GregoryFaust/samblaster/releases/download/v.${SAMBLASTER_VERSION}/samblaster-v.${SAMBLASTER_VERSION}.tar.gz -o samblaster-v.${SAMBLASTER_VERSION}.tar.gz && \
+tar xvf samblaster-v.${SAMBLASTER_VERSION}.tar.gz && \
+cd samblaster-v.${SAMBLASTER_VERSION}/ && \
+make && \
+cp samblaster /usr/bin && \
+cd .. && \
+rm -R samblaster-v.${SAMBLASTER_VERSION}/
+
+%environment
+export SAMBLASTER_VERSION=0.1.24
+
+%runscript
+exec /bin/bash "$@"
--
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