diff --git a/src/nf_modules/multiqc/multiqc_paired.config b/src/nf_modules/multiqc/multiqc_paired.config index c6af20124ed843db63b2c9a36f63f37fc174c38a..3824f623bda22d752b95941e18acce0eec0b2dbc 100644 --- a/src/nf_modules/multiqc/multiqc_paired.config +++ b/src/nf_modules/multiqc/multiqc_paired.config @@ -55,5 +55,31 @@ profiles { } } } + ccin2p3 { + process{ + withName: fastqc_fastq { + beforeScript = "PATH=/sps/lbmc/common/nextflow/src/singularity_modules/fastqc/0.11.5/:/usr/bin:$PATH" + scratch = true + stageInMode = "copy" + stageOutMode = "rsync" + executor = "sge" + clusterOptions = "-P P_lbmc -l os=cl7 -l sps=1 -r n" + cpus = 1 + memory = "10GB" + time = "24h" + } + withName: multiqc { + beforeScript = "PATH=/sps/lbmc/common/nextflow/src/singularity_modules/multiqc/1.7/:/usr/bin:$PATH" + scratch = true + stageInMode = "copy" + stageOutMode = "rsync" + executor = "sge" + clusterOptions = "-P P_lbmc -l os=cl7 -l sps=1 -r n" + cpus = 1 + memory = "10GB" + time = "24h" + } + } + } } diff --git a/src/nf_modules/multiqc/multiqc_single.config b/src/nf_modules/multiqc/multiqc_single.config index 42d1406c8223b98d22e9fa87b4585578662ffb5e..b451a30c2cc2882febc64cd5fcaf2bfb25cacde1 100644 --- a/src/nf_modules/multiqc/multiqc_single.config +++ b/src/nf_modules/multiqc/multiqc_single.config @@ -54,4 +54,30 @@ profiles { } } } + ccin2p3 { + process{ + withName: fastqc_fastq { + beforeScript = "PATH=/sps/lbmc/common/nextflow/src/singularity_modules/fastqc/0.11.5/:/usr/bin:$PATH" + scratch = true + stageInMode = "copy" + stageOutMode = "rsync" + executor = "sge" + clusterOptions = "-P P_lbmc -l os=cl7 -l sps=1 -r n" + cpus = 1 + memory = "10GB" + time = "24h" + } + withName: multiqc { + beforeScript = "PATH=/sps/lbmc/common/nextflow/src/singularity_modules/multiqc/1.7/:/usr/bin:$PATH" + scratch = true + stageInMode = "copy" + stageOutMode = "rsync" + executor = "sge" + clusterOptions = "-P P_lbmc -l os=cl7 -l sps=1 -r n" + cpus = 1 + memory = "10GB" + time = "24h" + } + } + } }