From edfb1092a1aaa40545b1aeea6ced8b1444d36d75 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent@modolo.fr>
Date: Fri, 22 Mar 2019 13:34:03 +0100
Subject: [PATCH] umitools: add docker and singularity files
---
.../umitools/0.3.4/build.sh | 3 ++
.../umitools/0.3.4/umitools.def | 28 +++++++++++++++++++
2 files changed, 31 insertions(+)
create mode 100755 src/singularity_modules/umitools/0.3.4/build.sh
create mode 100644 src/singularity_modules/umitools/0.3.4/umitools.def
diff --git a/src/singularity_modules/umitools/0.3.4/build.sh b/src/singularity_modules/umitools/0.3.4/build.sh
new file mode 100755
index 00000000..8ccd233e
--- /dev/null
+++ b/src/singularity_modules/umitools/0.3.4/build.sh
@@ -0,0 +1,3 @@
+#/bin/sh
+sudo singularity build --force bin/umitools:0.3.4.sif docker://quay.io/biocontainers/umitools:0.3.4--py37_1 && \
+singularity sign bin/umitools:0.3.4.sif
diff --git a/src/singularity_modules/umitools/0.3.4/umitools.def b/src/singularity_modules/umitools/0.3.4/umitools.def
new file mode 100644
index 00000000..4d1dd2af
--- /dev/null
+++ b/src/singularity_modules/umitools/0.3.4/umitools.def
@@ -0,0 +1,28 @@
+Bootstrap: docker
+From: ubuntu:18.04
+%labels
+MAINTAINER Laurent Modolo
+%post
+
+UMITOOLS_VERSION=0.3.4
+PACKAGES="git \
+build-essential \
+python-pip \
+ca-certificates \
+python-setuptools \
+python-dev \
+python-numpy \
+python-wheel \
+zlib1g-dev"
+
+apt-get update && \
+apt-get install -y --no-install-recommends ${PACKAGES} && \
+apt-get clean
+
+pip install umitools==${UMITOOLS_VERSION}
+
+%environment
+export UMITOOLS_VERSION=0.3.4
+
+%runscript
+exec /bin/bash "$@"
--
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