From ec397a7f9fa5522f49861c18f106cab827ade440 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Mon, 19 Apr 2021 11:31:52 +0200
Subject: [PATCH] fastp: fix json output file
---
src/nf_modules/fastp/main.nf | 12 ++++++------
1 file changed, 6 insertions(+), 6 deletions(-)
diff --git a/src/nf_modules/fastp/main.nf b/src/nf_modules/fastp/main.nf
index 7b5d9b56..2593eefe 100644
--- a/src/nf_modules/fastp/main.nf
+++ b/src/nf_modules/fastp/main.nf
@@ -39,9 +39,9 @@ process fastp_default {
tuple val(file_id), path(reads)
output:
- tuple val(file_id), path("*.fastq.gz"), emit: fastq
- tuple val(file_id), path("*.html"), emit: html
- tuple val(file_id), path("*.json"), emit: report
+ tuple val(file_id), path("*_trim.fastq.gz"), emit: fastq
+ tuple val(file_id), path("${file_prefix}.html"), emit: html
+ tuple val(file_id), path("${file_prefix}_fastp.json"), emit: report
script:
if (file_id instanceof List){
@@ -91,9 +91,9 @@ process fastp_accel_1splus {
tuple val(file_id), path(reads)
output:
- tuple val(file_id), path("*.fastq.gz"), emit: fastq
- tuple val(file_id), path("*.html"), emit: html
- tuple val(file_id), path("*.json"), emit: report
+ tuple val(file_id), path("*_trim.fastq.gz"), emit: fastq
+ tuple val(file_id), path("${file_prefix}.html"), emit: html
+ tuple val(file_id), path("${file_prefix}_fastp.json"), emit: report
script:
if (file_id instanceof List){
--
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