diff --git a/src/.docker_modules/bwa/0.7.17/Dockerfile b/src/.docker_modules/bwa/0.7.17/Dockerfile index eaae571bccea25e5f9938667009f7d3a1290b48f..b5b5859a8f29564c5f260a094890223d4f04ebda 100644 --- a/src/.docker_modules/bwa/0.7.17/Dockerfile +++ b/src/.docker_modules/bwa/0.7.17/Dockerfile @@ -4,14 +4,11 @@ MAINTAINER Laurent Modolo ENV BWA_VERSION=0.7.17 ENV SAMBLASTER_VERSION=0.1.24 -ENV PACKAGES curl=7.58* \ - ca-certificates=20180409 \ - build-essential=12.4* \ - zlib1g-dev=1:1.2.11* +ENV PACKAGES curl \ + g++ -RUN apt-get update && \ - apt-get install -y --no-install-recommends ${PACKAGES} && \ - apt-get clean +RUN apk update && \ + apk add ${PACKAGES} RUN curl -k -L https://github.com/lh3/bwa/releases/download/v${BWA_VERSION}/bwa-${BWA_VERSION}.tar.bz2 -o bwa-v${BWA_VERSION}.tar.bz2 && \ tar xjf bwa-v${BWA_VERSION}.tar.bz2 && \ @@ -21,11 +18,3 @@ cp bwa /usr/bin && \ cd .. && \ rm -R bwa-${BWA_VERSION}/ -RUN curl -k -L https://github.com/GregoryFaust/samblaster/releases/download/v.${SAMBLASTER_VERSION}/samblaster-v.${SAMBLASTER_VERSION}.tar.gz -o samblaster-v.${SAMBLASTER_VERSION}.tar.gz && \ -tar xvf samblaster-v.${SAMBLASTER_VERSION}.tar.gz && \ -cd samblaster-v.${SAMBLASTER_VERSION}/ && \ -make && \ -cp samblaster /usr/bin && \ -cd .. && \ -rm -R samblaster-v.${SAMBLASTER_VERSION}/ -RUN chmod +x /usr/bin/*