diff --git a/src/nf_modules/danpos/main.nf b/src/nf_modules/danpos/main.nf index 10d42f49848f4ec57c950cde040bc6274fea6839..f23b5a8cb1c3f16adab8c05740a318185e9f387d 100644 --- a/src/nf_modules/danpos/main.nf +++ b/src/nf_modules/danpos/main.nf @@ -17,7 +17,7 @@ process dpos_bam { } input: - tuple val(file_id), path(fastq) + tuple val(fastq_id), path(fastq) tuple val(file_id), path(bam_ip), path(bam_wce) output: @@ -71,7 +71,7 @@ process dpos_wig { } input: - tuple val(file_id), path(fastq) + tuple val(fastq_id), path(fastq) tuple val(file_id), path(wig_ip), path(wig_wce) output: @@ -130,25 +130,25 @@ process dpos_wigvswig { } input: - tuple val(file_id), path(fastq) - tuple val(file_id), path(wig_ip_a), path(wig_wce_a) - tuple val(file_id), path(wig_ip_b), path(wig_wce_b) + tuple val(fastq_id), path(fastq) + tuple val(file_id_a), path(wig_ip_a), path(wig_wce_a) + tuple val(file_id_b), path(wig_ip_b), path(wig_wce_b) output: - tuple file_id, "${file_prefix}/pooled/*.wig" into wig - tuple val(file_id), path("${file_prefix}"), emit: folder + tuple file_id_a, "${file_prefix}/pooled/*.wig" into wig + tuple val(file_id_a), path("${file_prefix}"), emit: folder script: - switch(file_id) { + switch(file_id_a) { case {it instanceof List}: - file_prefix = file_id[0] + file_prefix = file_id_a[0] break case {it instanceof Map}: - file_prefix = file_id.values()[0] + file_prefix = file_id_a.values()[0] break default: - file_prefix = file_id + file_prefix = file_id_a break } @@ -177,7 +177,7 @@ process dpeak_bam { } input: - tuple val(file_id), path(fastq) + tuple val(fastq_id), path(fastq) tuple val(file_id), path(bam_ip), path(bam_wce) output: @@ -232,7 +232,7 @@ process dpeak_wig { } input: - tuple val(file_id), path(fastq) + tuple val(fastq_id), path(fastq) tuple val(file_id), path(wig_ip), path(wig_wce) output: @@ -292,25 +292,25 @@ process dpeak_wigvswig { } input: - tuple val(file_id), path(fastq) - tuple val(file_id), path(wig_ip_a), path(wig_wce_a) - tuple val(file_id), path(wig_ip_b), path(wig_wce_b) + tuple val(fastq_id), path(fastq) + tuple val(file_id_a), path(wig_ip_a), path(wig_wce_a) + tuple val(file_id_b), path(wig_ip_b), path(wig_wce_b) output: - tuple file_id, "${file_prefix}/pooled/*.wig" into wig - tuple val(file_id), path("${file_prefix}"), emit: folder + tuple file_id_a, "${file_prefix}/pooled/*.wig" into wig + tuple val(file_id_a), path("${file_prefix}"), emit: folder script: - switch(file_id) { + switch(file_id_a) { case {it instanceof List}: - file_prefix = file_id[0] + file_prefix = file_id_a[0] break case {it instanceof Map}: - file_prefix = file_id.values()[0] + file_prefix = file_id_a.values()[0] break default: - file_prefix = file_id + file_prefix = file_id_a break }