diff --git a/src/nf_modules/cutadapt/adaptor_removal_paired.config b/src/nf_modules/cutadapt/adaptor_removal_paired.config index fefbf0dd262dfc968f9c52a60d96644e9bd07b00..f7d0ebbdb2fb668a70894ce35fcad6130a001245 100644 --- a/src/nf_modules/cutadapt/adaptor_removal_paired.config +++ b/src/nf_modules/cutadapt/adaptor_removal_paired.config @@ -32,4 +32,19 @@ profiles { } } } + ccin2p3 { + process{ + withName: adaptor_removal { + beforeScript = "PATH=/sps/lbmc/common/nextflow/src/singularity_modules/cutadapt/2.1/:/usr/bin:$PATH" + scratch = true + stageInMode = "copy" + stageOutMode = "rsync" + executor = "sge" + clusterOptions = "-P P_lbmc -l os=cl7 -l sps=1 -r n" + cpus = 1 + memory = "10GB" + time = "24h" + } + } + } } diff --git a/src/nf_modules/cutadapt/adaptor_removal_single.config b/src/nf_modules/cutadapt/adaptor_removal_single.config index fefbf0dd262dfc968f9c52a60d96644e9bd07b00..f7d0ebbdb2fb668a70894ce35fcad6130a001245 100644 --- a/src/nf_modules/cutadapt/adaptor_removal_single.config +++ b/src/nf_modules/cutadapt/adaptor_removal_single.config @@ -32,4 +32,19 @@ profiles { } } } + ccin2p3 { + process{ + withName: adaptor_removal { + beforeScript = "PATH=/sps/lbmc/common/nextflow/src/singularity_modules/cutadapt/2.1/:/usr/bin:$PATH" + scratch = true + stageInMode = "copy" + stageOutMode = "rsync" + executor = "sge" + clusterOptions = "-P P_lbmc -l os=cl7 -l sps=1 -r n" + cpus = 1 + memory = "10GB" + time = "24h" + } + } + } } diff --git a/src/nf_modules/cutadapt/trimming_paired.config b/src/nf_modules/cutadapt/trimming_paired.config index cc3e9422fa8e05d9a2c67821d0dff51489a7f5f8..35f0963e83214b7b5bf80935aacd5c13317ca17a 100644 --- a/src/nf_modules/cutadapt/trimming_paired.config +++ b/src/nf_modules/cutadapt/trimming_paired.config @@ -32,4 +32,19 @@ profiles { } } } + ccin2p3 { + process{ + withName: trimming { + beforeScript = "PATH=/sps/lbmc/common/nextflow/src/singularity_modules/cutadapt/2.1/:/usr/bin:$PATH" + scratch = true + stageInMode = "copy" + stageOutMode = "rsync" + executor = "sge" + clusterOptions = "-P P_lbmc -l os=cl7 -l sps=1 -r n" + cpus = 1 + memory = "10GB" + time = "24h" + } + } + } } diff --git a/src/nf_modules/cutadapt/trimming_single.config b/src/nf_modules/cutadapt/trimming_single.config index cc3e9422fa8e05d9a2c67821d0dff51489a7f5f8..35f0963e83214b7b5bf80935aacd5c13317ca17a 100644 --- a/src/nf_modules/cutadapt/trimming_single.config +++ b/src/nf_modules/cutadapt/trimming_single.config @@ -32,4 +32,19 @@ profiles { } } } + ccin2p3 { + process{ + withName: trimming { + beforeScript = "PATH=/sps/lbmc/common/nextflow/src/singularity_modules/cutadapt/2.1/:/usr/bin:$PATH" + scratch = true + stageInMode = "copy" + stageOutMode = "rsync" + executor = "sge" + clusterOptions = "-P P_lbmc -l os=cl7 -l sps=1 -r n" + cpus = 1 + memory = "10GB" + time = "24h" + } + } + } }