diff --git a/src/conda_psmn.sh b/src/conda_psmn.sh
deleted file mode 100644
index 3a91a796363fdad29014c4df79874754b9b2621a..0000000000000000000000000000000000000000
--- a/src/conda_psmn.sh
+++ /dev/null
@@ -1,5 +0,0 @@
-#!/bin/sh
-CONDA_PATH=/Xnfs/lbmcdb/common/conda/
-source ${CONDA_PATH}init.sh
-CONDA_ENVS=${CONDA_PATH}/envs/
-
diff --git a/src/conda_psmn.sh b/src/conda_psmn.sh
new file mode 120000
index 0000000000000000000000000000000000000000..cbb3d9b56bffb23950376e4f50dea1a7a88c80c8
--- /dev/null
+++ b/src/conda_psmn.sh
@@ -0,0 +1 @@
+/Xnfs/lbmcdb/common/conda/init.sh
\ No newline at end of file
diff --git a/src/training_dataset.config b/src/training_dataset.config
index 43e8588a1b1e08882d3b92f569ac72fae90e174e..deb62fecf60782206980557c3de7359db8b5a618 100644
--- a/src/training_dataset.config
+++ b/src/training_dataset.config
@@ -118,8 +118,8 @@ profiles {
   psmn {
     process{
       withName: build_synthetic_bed {
-        beforeScript = "$workflow.projectDir/src/conda_psmn.sh"
-        conda = "src/.conda_envs/bedtools_2.25.0"
+        beforeScript = "source $baseDir/conda_psmn.sh"
+        conda = "$baseDir/.conda_envs/bedtools_2.25.0"
         executor = "sge"
         clusterOptions = "-m e -cwd -V"
         cpus = 1
@@ -128,8 +128,8 @@ profiles {
         queue = 'monointeldeb128,monointeldeb48,h48-E5-2670deb128,h6-E5-2667v4deb128'
       }
       withName: fasta_from_bed {
-        beforeScript = "$workflow.projectDir/src/conda_psmn.sh"
-        conda = "src/.conda_envs/bedtools_2.25.0"
+        beforeScript = "source $baseDir/conda_psmn.sh"
+        conda = "$baseDir/.conda_envs/bedtools_2.25.0"
         executor = "sge"
         clusterOptions = "-m e -cwd -V"
         cpus = 1
@@ -138,8 +138,8 @@ profiles {
         queue = 'monointeldeb128,monointeldeb48,h48-E5-2670deb128,h6-E5-2667v4deb128'
       }
       withName: index_fasta {
-        beforeScript = "$workflow.projectDir/src/conda_psmn.sh"
-        conda = "src/.conda_envs/bowtie2_2.3.4.1"
+        beforeScript = "source $baseDir/conda_psmn.sh"
+        conda = "$baseDir/.conda_envs/bowtie2_2.3.4.1"
         executor = "sge"
         clusterOptions = "-m e -cwd -V"
         cpus = 16
@@ -149,8 +149,8 @@ profiles {
         penv = 'openmp16'
       }
       withName: mapping_fastq_paired {
-        beforeScript = "$workflow.projectDir/src/conda_psmn.sh"
-        conda = "src/.conda_envs/bowtie2_2.3.4.1"
+        beforeScript = "source $baseDir/conda_psmn.sh"
+        conda = "$baseDir/.conda_envs/bowtie2_2.3.4.1"
         executor = "sge"
         clusterOptions = "-m e -cwd -V"
         cpus = 16
@@ -160,8 +160,8 @@ profiles {
         penv = 'openmp16'
       }
       withName: bam_2_fastq_paired {
-        beforeScript = "$workflow.projectDir/src/conda_psmn.sh"
-        conda = "src/.conda_envs/samtools_1.7"
+        beforeScript = "source $baseDir/conda_psmn.sh"
+        conda = "$baseDir/.conda_envs/samtools_1.7"
         executor = "sge"
         clusterOptions = "-m e -cwd -V"
         cpus = 16
@@ -171,8 +171,8 @@ profiles {
         penv = 'openmp16'
       }
       withName: sort_bam_paired {
-        beforeScript = "$workflow.projectDir/src/conda_psmn.sh"
-        conda = "src/.conda_envs/samtools_1.7"
+        beforeScript = "source $baseDir/conda_psmn.sh"
+        conda = "$baseDir/.conda_envs/samtools_1.7"
         executor = "sge"
         clusterOptions = "-m e -cwd -V"
         cpus = 16
@@ -182,8 +182,8 @@ profiles {
         penv = 'openmp16'
       }
       withName: index_bam_paired {
-        beforeScript = "$workflow.projectDir/src/conda_psmn.sh"
-        conda = "src/.conda_envs/samtools_1.7"
+        beforeScript = "source $baseDir/conda_psmn.sh"
+        conda = "$baseDir/.conda_envs/samtools_1.7"
         executor = "sge"
         clusterOptions = "-m e -cwd -V"
         cpus = 16
@@ -193,8 +193,8 @@ profiles {
         penv = 'openmp16'
       }
       withName: mapping_fastq_single {
-        beforeScript = "$workflow.projectDir/src/conda_psmn.sh"
-        conda = "src/.conda_envs/bowtie2_2.3.4.1"
+        beforeScript = "source $baseDir/conda_psmn.sh"
+        conda = "$baseDir/.conda_envs/bowtie2_2.3.4.1"
         executor = "sge"
         clusterOptions = "-m e -cwd -V"
         cpus = 16
@@ -204,8 +204,8 @@ profiles {
         penv = 'openmp16'
       }
       withName: bam_2_fastq_single {
-        beforeScript = "$workflow.projectDir/src/conda_psmn.sh"
-        conda = "src/.conda_envs/samtools_1.7"
+        beforeScript = "source $baseDir/conda_psmn.sh"
+        conda = "$baseDir/.conda_envs/samtools_1.7"
         executor = "sge"
         clusterOptions = "-m e -cwd -V"
         cpus = 16
@@ -215,8 +215,8 @@ profiles {
         penv = 'openmp16'
       }
       withName: sort_bam_single {
-        beforeScript = "$workflow.projectDir/src/conda_psmn.sh"
-        conda = "src/.conda_envs/samtools_1.7"
+        beforeScript = "source $baseDir/conda_psmn.sh"
+        conda = "$baseDir/.conda_envs/samtools_1.7"
         executor = "sge"
         clusterOptions = "-m e -cwd -V"
         cpus = 16
@@ -226,8 +226,8 @@ profiles {
         penv = 'openmp16'
       }
       withName: index_bam_single {
-        beforeScript = "$workflow.projectDir/src/conda_psmn.sh"
-        conda = "src/.conda_envs/samtools_1.7"
+        beforeScript = "source $baseDir/conda_psmn.sh"
+        conda = "$baseDir/.conda_envs/samtools_1.7"
         executor = "sge"
         clusterOptions = "-m e -cwd -V"
         cpus = 16