diff --git a/src/nf_modules/danpos/main.nf b/src/nf_modules/danpos/main.nf index 5088e93c15490bd9676476068ddb2664045dafcb..981ac496547df7248990050de34f3e5ea2b76e54 100644 --- a/src/nf_modules/danpos/main.nf +++ b/src/nf_modules/danpos/main.nf @@ -69,7 +69,7 @@ danpos.py dpos -m ${m} \ ${bam_ip} mv ${file_prefix}/pooled/* ${file_prefix}/ rm -R ${file_prefix}/pooled -awk -v FS='\t' -v OFS='\t' 'FNR > 1 { print \$1, \$2-1, \$3, "Interval_"NR-1, \$6, "+" }' ${file_prefix}/${bam_ip.simpleName}.positions.xls > ${file_prefix}/${bam_ip.simpleName}.positions.bed +awk -v FS='\t' -v OFS='\t' 'FNR > 1 { print \$1, \$2-1, \$3, "Interval_"NR-1, \$6, "+" }' ${file_prefix}/${bam_ip.simpleName}.bgsub.positions.xls > ${file_prefix}/${bam_ip.simpleName}.bgsub.positions.bed """ }