From d98673b697464bdf9f7af8b916d139d71eeb4c96 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Tue, 5 Mar 2019 14:08:36 +0100
Subject: [PATCH] ucsc: add singularity files
---
src/singularity_modules/ucsc/375/build.sh | 3 ++
src/singularity_modules/ucsc/375/ucsc.def | 36 +++++++++++++++++++++++
2 files changed, 39 insertions(+)
create mode 100755 src/singularity_modules/ucsc/375/build.sh
create mode 100644 src/singularity_modules/ucsc/375/ucsc.def
diff --git a/src/singularity_modules/ucsc/375/build.sh b/src/singularity_modules/ucsc/375/build.sh
new file mode 100755
index 00000000..ce484863
--- /dev/null
+++ b/src/singularity_modules/ucsc/375/build.sh
@@ -0,0 +1,3 @@
+#/bin/sh
+sudo singularity build --force bin/ucsc:375.sif src/singularity_modules/ucsc/375/ucsc.def
+singularity sign bin/ucsc:375.sif
diff --git a/src/singularity_modules/ucsc/375/ucsc.def b/src/singularity_modules/ucsc/375/ucsc.def
new file mode 100644
index 00000000..a1d1a743
--- /dev/null
+++ b/src/singularity_modules/ucsc/375/ucsc.def
@@ -0,0 +1,36 @@
+Bootstrap: docker
+From: debian:jessie
+
+%labels
+MAINTAINER Laurent Modolo
+
+%post
+UCSC_VERSION=375
+PACKAGES="apt-utils \
+ curl \
+ build-essential \
+ libssl-dev \
+ libpng-dev \
+ uuid-dev \
+ libmysqlclient-dev \
+ rsync"
+
+apt-get update && \
+apt-get install -y --no-install-recommends ${PACKAGES} && \
+apt-get clean
+
+curl -k -L http://hgdownload.soe.ucsc.edu/admin/exe/userApps.v${UCSC_VERSION}.src.tgz -o userApps.v${UCSC_VERSION}.src.tgz &&\
+tar xvf userApps.v${UCSC_VERSION}.src.tgz &&\
+cd userApps/ && \
+make &&\
+cd .. &&\
+mv userApps/bin/* /usr/bin/ &&\
+rm -R userApps.v${UCSC_VERSION}.src.tgz &&\
+rm -R userApps
+
+%environment
+export UCSC_VERSION=375
+
+%runscript
+exec /bin/bash "$@"
+
--
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