From d62c64d2a1a162f1ca045f1373856974d3fc61e6 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Fri, 21 May 2021 17:39:06 +0200
Subject: [PATCH] gffread: add -x and -M option

---
 src/nf_modules/gffread/main.nf | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/src/nf_modules/gffread/main.nf b/src/nf_modules/gffread/main.nf
index 6b673bb1..dcc4bf5e 100644
--- a/src/nf_modules/gffread/main.nf
+++ b/src/nf_modules/gffread/main.nf
@@ -25,6 +25,6 @@ process gffread {
     file_prefix = file_id
   }
   """
-  gffread ${gtf} -g ${fasta} -x -o ${file_prefix}.fasta
+  gffread ${gtf} -g ${fasta} -M -x ${file_prefix}.fasta
   """
-}
\ No newline at end of file
+}
-- 
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