From d62c64d2a1a162f1ca045f1373856974d3fc61e6 Mon Sep 17 00:00:00 2001 From: Laurent Modolo <laurent.modolo@ens-lyon.fr> Date: Fri, 21 May 2021 17:39:06 +0200 Subject: [PATCH] gffread: add -x and -M option --- src/nf_modules/gffread/main.nf | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/src/nf_modules/gffread/main.nf b/src/nf_modules/gffread/main.nf index 6b673bb1..dcc4bf5e 100644 --- a/src/nf_modules/gffread/main.nf +++ b/src/nf_modules/gffread/main.nf @@ -25,6 +25,6 @@ process gffread { file_prefix = file_id } """ - gffread ${gtf} -g ${fasta} -x -o ${file_prefix}.fasta + gffread ${gtf} -g ${fasta} -M -x ${file_prefix}.fasta """ -} \ No newline at end of file +} -- GitLab