diff --git a/src/nf_modules/hisat2/mapping_paired.config b/src/nf_modules/hisat2/mapping_paired.config index 6f3aa47b1d1d7fc417230c0807aefd4d30d7d234..e23abd8ada183b12d015b19dc5c3f1e65cfc8ac6 100644 --- a/src/nf_modules/hisat2/mapping_paired.config +++ b/src/nf_modules/hisat2/mapping_paired.config @@ -22,7 +22,7 @@ profiles { process{ withName: mapping_fastq { beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules" - module = "hisat2/2.0.0" + module = "hisat2/2.0.0:samtools/1.7" executor = "sge" clusterOptions = "-cwd -V" memory = "20GB" diff --git a/src/nf_modules/hisat2/mapping_single.config b/src/nf_modules/hisat2/mapping_single.config index 6f3aa47b1d1d7fc417230c0807aefd4d30d7d234..e23abd8ada183b12d015b19dc5c3f1e65cfc8ac6 100644 --- a/src/nf_modules/hisat2/mapping_single.config +++ b/src/nf_modules/hisat2/mapping_single.config @@ -22,7 +22,7 @@ profiles { process{ withName: mapping_fastq { beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules" - module = "hisat2/2.0.0" + module = "hisat2/2.0.0:samtools/1.7" executor = "sge" clusterOptions = "-cwd -V" memory = "20GB" diff --git a/src/psmn_modules b/src/psmn_modules index 5d8170aa039744a50c6cf967aabb3c2196efa7d9..9ae41bf72d4f536d73a76dfd13e375bca7d4f48e 160000 --- a/src/psmn_modules +++ b/src/psmn_modules @@ -1 +1 @@ -Subproject commit 5d8170aa039744a50c6cf967aabb3c2196efa7d9 +Subproject commit 9ae41bf72d4f536d73a76dfd13e375bca7d4f48e