diff --git a/src/nf_modules/Hisat2/test/tests.sh b/src/nf_modules/Hisat2/test/tests.sh new file mode 100755 index 0000000000000000000000000000000000000000..261e9f2fe61fe7a0174031fb5c2b8a7d057150eb --- /dev/null +++ b/src/nf_modules/Hisat2/test/tests.sh @@ -0,0 +1,21 @@ +nextflow src/nf_modules/Hisat2/test/index.nf \ + -c src/nf_modules/Hisat2/hisat2.config \ + -profile docker \ + --fasta "data/tiny_dataset/fasta/tiny_v2.fasta" + +nextflow src/nf_modules/Hisat2/test/mapping_paired.nf \ + -c src/nf_modules/Hisat2/hisat2.config \ + -profile docker \ + --index "results/mapping/index/tiny_v2.index*" \ + --fastq "data/tiny_dataset/fastq/tiny*_R{1,2}.fastq" + +nextflow src/nf_modules/Hisat2/test/mapping_single.nf \ + -c src/nf_modules/Hisat2/hisat2.config \ + -profile docker \ + --index "results/mapping/index/tiny_v2.index*" \ + --fastq "data/tiny_dataset/fastq/tiny*_S.fastq" + +nextflow src/nf_modules/Hisat2/test/bam_converter.nf \ + -c src/nf_modules/Hisat2/hisat2.config \ + -profile docker \ + --sam "results/mapping/*.sam" \