From d144d7dbb520a422053f4b7d7e2c1b9f6517c4bd Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Mon, 4 Oct 2021 16:00:33 +0200
Subject: [PATCH] danpos: change bg to bw
---
src/nf_modules/danpos/main.nf | 35 ++++++++++++++++++-----------------
1 file changed, 18 insertions(+), 17 deletions(-)
diff --git a/src/nf_modules/danpos/main.nf b/src/nf_modules/danpos/main.nf
index ece0991b..a1183b74 100644
--- a/src/nf_modules/danpos/main.nf
+++ b/src/nf_modules/danpos/main.nf
@@ -52,13 +52,13 @@ danpos.py dpos -m ${m}
"""
}
-workflow dpos_bg {
+workflow dpos_bw {
take:
fastq
- bg_ip
- bg_wce
+ bz_ip
+ bw_wce
main:
- dpos_wig(fastq, bigwig_to_wig(bg_ip), bigwig_to_wig(bg_wce))
+ dpos_wig(fastq, bigwig_to_wig(bw_ip), bigwig_to_wig(bw_wce))
emit:
wig = dpos_wig.out.wig
folder = dpos_wig.out.folder
@@ -201,18 +201,19 @@ danpos.py dpeak -m ${m}
"""
}
-workflow dpeak_bg {
+workflow dpeak_bw {
take:
fastq
- bg_ip
- bg_wce
+ bw_ip
+ bw_wce
main:
- dpeak_wig(fastq, bigwig_to_wig(bg_ip), bigwig_to_wig(bg_wce))
+ dpeak_wig(fastq, bigwig_to_wig(bw_ip), bigwig_to_wig(bw_wce))
emit:
wig = dpeak_wig.out.wig
folder = dpeak_wig.out.folder
}
+
process dpeak_wig {
container = "${container_url}"
label "big_mem_mono_cpus"
@@ -257,20 +258,20 @@ danpos.py dpeak -m ${m}
"""
}
-workflow dpeak_bgvsbg {
+workflow dpeak_bwvsbw {
take:
fastq
- bg_ip_a
- bg_wce_a
- bg_ip_b
- bg_wce_b
+ bw_ip_a
+ bw_wce_a
+ bw_ip_b
+ bw_wce_b
main:
dpeak_wigvswig(
fastq,
- bigwig_to_wig(bg_ip_a),
- bigwig_to_wig(bg_wce_a),
- bigwig_to_wig(bg_ip_b),
- bigwig_to_wig(bg_wce_b)
+ bigwig_to_wig(bw_ip_a),
+ bigwig_to_wig(bw_wce_a),
+ bigwig_to_wig(bw_ip_b),
+ bigwig_to_wig(bw_wce_b)
)
emit:
wig = dpeak_wig.out.wig
--
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