diff --git a/src/nf_modules/danpos/main.nf b/src/nf_modules/danpos/main.nf index ece0991bdfdb9fbb5d5513b78d5484363e053b59..a1183b74fe34508ad8c3be68c682028eeb33b016 100644 --- a/src/nf_modules/danpos/main.nf +++ b/src/nf_modules/danpos/main.nf @@ -52,13 +52,13 @@ danpos.py dpos -m ${m} """ } -workflow dpos_bg { +workflow dpos_bw { take: fastq - bg_ip - bg_wce + bz_ip + bw_wce main: - dpos_wig(fastq, bigwig_to_wig(bg_ip), bigwig_to_wig(bg_wce)) + dpos_wig(fastq, bigwig_to_wig(bw_ip), bigwig_to_wig(bw_wce)) emit: wig = dpos_wig.out.wig folder = dpos_wig.out.folder @@ -201,18 +201,19 @@ danpos.py dpeak -m ${m} """ } -workflow dpeak_bg { +workflow dpeak_bw { take: fastq - bg_ip - bg_wce + bw_ip + bw_wce main: - dpeak_wig(fastq, bigwig_to_wig(bg_ip), bigwig_to_wig(bg_wce)) + dpeak_wig(fastq, bigwig_to_wig(bw_ip), bigwig_to_wig(bw_wce)) emit: wig = dpeak_wig.out.wig folder = dpeak_wig.out.folder } + process dpeak_wig { container = "${container_url}" label "big_mem_mono_cpus" @@ -257,20 +258,20 @@ danpos.py dpeak -m ${m} """ } -workflow dpeak_bgvsbg { +workflow dpeak_bwvsbw { take: fastq - bg_ip_a - bg_wce_a - bg_ip_b - bg_wce_b + bw_ip_a + bw_wce_a + bw_ip_b + bw_wce_b main: dpeak_wigvswig( fastq, - bigwig_to_wig(bg_ip_a), - bigwig_to_wig(bg_wce_a), - bigwig_to_wig(bg_ip_b), - bigwig_to_wig(bg_wce_b) + bigwig_to_wig(bw_ip_a), + bigwig_to_wig(bw_wce_a), + bigwig_to_wig(bw_ip_b), + bigwig_to_wig(bw_wce_b) ) emit: wig = dpeak_wig.out.wig