From ceca3ce0513a67370ce258f6b1d2f827cc04329b Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Thu, 30 Mar 2023 09:55:23 +0200
Subject: [PATCH] nextflow.config: add bind option for the psmn
---
src/nextflow.config | 1 +
1 file changed, 1 insertion(+)
diff --git a/src/nextflow.config b/src/nextflow.config
index 97a98834..3365bc8c 100644
--- a/src/nextflow.config
+++ b/src/nextflow.config
@@ -86,6 +86,7 @@ profiles {
psmn {
charliecloud.enabled = true
charliecloud.cacheDir = "/Xnfs/abc/charliecloud"
+ charliecloud.runOptions = "--bind /scratch:/scratch --bind /Xnfs:/Xnfs --bind /home:/home"
charliecloud.readOnlyInputs = true
process{
errorStrategy = { sleep(Math.pow(2, task.attempt) * 200 as long); return 'retry' }
--
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