diff --git a/src/nextflow.config b/src/nextflow.config index 97a988340999a0aaa4dba20700285a874bbe7603..3365bc8cbabacc051a99948f063cab59e58a8743 100644 --- a/src/nextflow.config +++ b/src/nextflow.config @@ -86,6 +86,7 @@ profiles { psmn { charliecloud.enabled = true charliecloud.cacheDir = "/Xnfs/abc/charliecloud" + charliecloud.runOptions = "--bind /scratch:/scratch --bind /Xnfs:/Xnfs --bind /home:/home" charliecloud.readOnlyInputs = true process{ errorStrategy = { sleep(Math.pow(2, task.attempt) * 200 as long); return 'retry' }