diff --git a/src/singularity_modules/htseq/0.8.0/build.sh b/src/singularity_modules/htseq/0.8.0/build.sh new file mode 100755 index 0000000000000000000000000000000000000000..f5fe19ae64b728fbc0a268cda9bed08b9561a165 --- /dev/null +++ b/src/singularity_modules/htseq/0.8.0/build.sh @@ -0,0 +1,3 @@ +#/bin/sh +sudo singularity build --force bin/htseq:0.8.0.sif src/singularity_modules/htseq/0.8.0/htseq.def +singularity sign bin/htseq:0.8.0.sif diff --git a/src/singularity_modules/htseq/0.8.0/htseq.def b/src/singularity_modules/htseq/0.8.0/htseq.def new file mode 100644 index 0000000000000000000000000000000000000000..d315b301755ed5393cc603ba2323b2f2617de156 --- /dev/null +++ b/src/singularity_modules/htseq/0.8.0/htseq.def @@ -0,0 +1,27 @@ +Bootstrap: docker +From: ubuntu:18.04 + +%labels +MAINTAINER Laurent Modolo + +%post +HTSEQ_VERSION=0.8.0 +PACKAGES="build-essential \ +python3-pip \ +python3-setuptools \ +python3-dev \ +python3-wheel" + +apt-get update && \ +apt-get install -y --no-install-recommends ${PACKAGES} && \ +apt-get clean + +pip3 install numpy==1.14.3 +pip3 install pysam==0.15.0 +pip3 install HTSeq==${HTSEQ_VERSION} + +%environment +export HTSEQ_VERSION=0.8.0 + +%runscript +exec /bin/bash "$@"