From cd23e1e33502f66b4f824a2868a4a2af438604ab Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Wed, 17 Feb 2021 10:02:11 +0100
Subject: [PATCH] samtools: modify output name of merge_multi_bam
---
src/nf_modules/samtools/main.nf | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/src/nf_modules/samtools/main.nf b/src/nf_modules/samtools/main.nf
index 7af44dda..9493c0e4 100644
--- a/src/nf_modules/samtools/main.nf
+++ b/src/nf_modules/samtools/main.nf
@@ -175,11 +175,11 @@ process merge_multi_bam {
tuple val(file_id), path(bams)
output:
- tuple val(file_id), path("*.bam*"), emit: bam
+ tuple val(file_id), path("*_merged.bam*"), emit: bam
script:
"""
samtools merge ${bams} \
- ${file_id}.bam
+ ${bams[0].simpleName}_merged.bam
"""
}
--
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