diff --git a/src/nf_modules/samtools/main.nf b/src/nf_modules/samtools/main.nf index 7af44ddace7e95ada2afd396a5dba80a8245e595..9493c0e4cddbb739bb03c740ac94f786806da55d 100644 --- a/src/nf_modules/samtools/main.nf +++ b/src/nf_modules/samtools/main.nf @@ -175,11 +175,11 @@ process merge_multi_bam { tuple val(file_id), path(bams) output: - tuple val(file_id), path("*.bam*"), emit: bam + tuple val(file_id), path("*_merged.bam*"), emit: bam script: """ samtools merge ${bams} \ - ${file_id}.bam + ${bams[0].simpleName}_merged.bam """ }