diff --git a/src/nf_modules/macs3/main.nf b/src/nf_modules/macs3/main.nf index 5d30355c2602846251502380a66f33ba186a9721..bc32f4e9cf1ec2259c468a012bd96717738e9983 100644 --- a/src/nf_modules/macs3/main.nf +++ b/src/nf_modules/macs3/main.nf @@ -18,7 +18,7 @@ process peak_calling { script: /* remove --nomodel option for real dataset */ """ -macs2 callpeak \ +macs3 callpeak \ --treatment ${bam_ip} \ --call-summits "True"\ --control ${bam_control} \ @@ -53,7 +53,7 @@ awk '{print \$1"\t"\$2"\t"\$3"\t.\t+\t"\$4}' ${bg_ip} > \ ${bg_ip.simpleName}.bed awk '{print \$1"\t"\$2"\t"\$3"\t.\t+\t"\$4}' ${bg_control} > \ ${bg_control.simpleName}.bed -macs2 callpeak \ +macs3 callpeak \ --treatment ${bg_ip.simpleName}.bed \ --call-summits "True"\ --control ${bg_control.simpleName}.bed \