From c09d0f5c6b8859ed3fabf32ffff8b6e0d0ab1711 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Thu, 2 May 2019 17:23:36 +0200
Subject: [PATCH] nextflow.pbs: change NF parameters order

---
 src/nextflow.pbs | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/src/nextflow.pbs b/src/nextflow.pbs
index 8f33cf9d..7c144e8a 100644
--- a/src/nextflow.pbs
+++ b/src/nextflow.pbs
@@ -1,4 +1,4 @@
-#!/bin/sh
+#! /usr/local/bin/bash -l
 #####################################
 # job script example with GE options
 #####################################
@@ -20,8 +20,8 @@ PIPELINE=/sps/lbmc/common/nextflow/src/nf_modules/kallisto/indexing.nf
 CONFIG=/sps/lbmc/common/nextflow/src/nf_modules/kallisto/indexing.config
 OPTIONx="--fasta \"data/tiny_dataset/fasta/tiny_v2.fasta\""
 
-time $NF \
--profile ccin2p3_conda \
+$NF \
 $PIPELINE \
 -c $CONFIG \
+-profile ccin2p3_conda \
 $OPTIONS
-- 
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