diff --git a/src/nextflow.pbs b/src/nextflow.pbs index 8f33cf9d8ac339eb9bd086be38cc2314f432d69e..7c144e8a65b2dcaf5e48015297a442486a5bc2e3 100644 --- a/src/nextflow.pbs +++ b/src/nextflow.pbs @@ -1,4 +1,4 @@ -#!/bin/sh +#! /usr/local/bin/bash -l ##################################### # job script example with GE options ##################################### @@ -20,8 +20,8 @@ PIPELINE=/sps/lbmc/common/nextflow/src/nf_modules/kallisto/indexing.nf CONFIG=/sps/lbmc/common/nextflow/src/nf_modules/kallisto/indexing.config OPTIONx="--fasta \"data/tiny_dataset/fasta/tiny_v2.fasta\"" -time $NF \ --profile ccin2p3_conda \ +$NF \ $PIPELINE \ -c $CONFIG \ +-profile ccin2p3_conda \ $OPTIONS