From b87a994acc8a628365377108f0e0c39713544e31 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Tue, 2 Nov 2021 12:11:28 +0100
Subject: [PATCH] samtools: add compatbility with mutlqc
---
src/nf_modules/samtools/main.nf | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/src/nf_modules/samtools/main.nf b/src/nf_modules/samtools/main.nf
index 10df2042..ed88dc56 100644
--- a/src/nf_modules/samtools/main.nf
+++ b/src/nf_modules/samtools/main.nf
@@ -270,7 +270,7 @@ process stats_bam {
output:
tuple val(file_id), path("*.tsv"), emit: tsv
- tuple val(file_id), path("*.flagstat.txt"), emit: report
+ path "*.flagstat.txt", emit: report
script:
"""
samtools flagstat -@ ${task.cpus} ${params.stats_bam} -O tsv ${bam} > ${bam.simpleName}.flagstat.txt
--
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