diff --git a/src/nf_modules/samtools/main.nf b/src/nf_modules/samtools/main.nf index 10df2042816d16f1ecf05064b8a94bb68128b66c..ed88dc56dfeaa239845c7f1f8467bfc1d81624eb 100644 --- a/src/nf_modules/samtools/main.nf +++ b/src/nf_modules/samtools/main.nf @@ -270,7 +270,7 @@ process stats_bam { output: tuple val(file_id), path("*.tsv"), emit: tsv - tuple val(file_id), path("*.flagstat.txt"), emit: report + path "*.flagstat.txt", emit: report script: """ samtools flagstat -@ ${task.cpus} ${params.stats_bam} -O tsv ${bam} > ${bam.simpleName}.flagstat.txt