diff --git a/src/kallisto_index.pbs b/src/kallisto_index.pbs index f280ef6bc205de3a77bf4451fdde17b4b95a113c..257b301f41d7a55e0f64882ea6f170ae7fa997dc 100644 --- a/src/kallisto_index.pbs +++ b/src/kallisto_index.pbs @@ -26,4 +26,4 @@ CONFIG=${SCRATCH}/nextflow/src/nf_modules/kallisto/indexing.config ${NF} ${PIPELINE} -c ${CONFIG} -profile ccin2p3_singularity \ --fasta "${SCRATCH}/nextflow/data/tiny_dataset/fasta/tiny_v2.fasta" \ --w "${SCRATCH}" +-w "${SCRATCH}" -ansi-log false diff --git a/src/nf_modules/kallisto/indexing.config b/src/nf_modules/kallisto/indexing.config index fd223447f151378bde673047ea3e75dc7bcca76c..7ba041dd8906d295310a7292753be42a13eaebaf 100644 --- a/src/nf_modules/kallisto/indexing.config +++ b/src/nf_modules/kallisto/indexing.config @@ -59,7 +59,7 @@ profiles { stageOutMode = "rsync" executor = "sge" clusterOptions = "-P P_lbmc -l os=cl7 -l sps=1 -r n \ - -o ~/logs/ -e ~/logs/" + -o ~/logs/ -e ~/logs/ -M laurent.modolo@ens-lyon.fr -m beas" cpus = 1 queue = 'huge' }