From b5141d92dde00251a2ffbd92577c0aa0e35162ce Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Wed, 29 May 2019 14:31:02 +0200
Subject: [PATCH] Docker modules: add "ps" to debian img
---
src/docker_modules/deeptools/3.0.2/Dockerfile | 1 +
src/docker_modules/r/3.5.3/Dockerfile | 2 +-
src/docker_modules/ucsc/375/Dockerfile | 1 +
src/docker_modules/umi_tools/1.0.0/Dockerfile | 1 +
src/docker_modules/urqt/d62c1f8/Dockerfile | 1 +
5 files changed, 5 insertions(+), 1 deletion(-)
diff --git a/src/docker_modules/deeptools/3.0.2/Dockerfile b/src/docker_modules/deeptools/3.0.2/Dockerfile
index adc17005..1d42cc93 100644
--- a/src/docker_modules/deeptools/3.0.2/Dockerfile
+++ b/src/docker_modules/deeptools/3.0.2/Dockerfile
@@ -8,6 +8,7 @@ ENV PACKAGES build-essential \
python3-dev \
python3-wheel \
zlib1g-dev \
+ procps \
libcurl4-gnutls-dev
RUN apt-get update && \
diff --git a/src/docker_modules/r/3.5.3/Dockerfile b/src/docker_modules/r/3.5.3/Dockerfile
index 69d0cd2f..7c937de7 100644
--- a/src/docker_modules/r/3.5.3/Dockerfile
+++ b/src/docker_modules/r/3.5.3/Dockerfile
@@ -2,6 +2,6 @@ FROM rocker/r-ver:3.5.3
MAINTAINER Remi Seraphin
RUN apt update && \
-apt install libssl-dev libcurl4-openssl-dev libxml2-dev zlib1g-dev git
+apt install libssl-dev libcurl4-openssl-dev libxml2-dev zlib1g-dev git procps
RUN R -e "install.packages('tidyverse'); \
install.packages('ggplot2')"
diff --git a/src/docker_modules/ucsc/375/Dockerfile b/src/docker_modules/ucsc/375/Dockerfile
index 8daf43a6..bd45e0ab 100644
--- a/src/docker_modules/ucsc/375/Dockerfile
+++ b/src/docker_modules/ucsc/375/Dockerfile
@@ -8,6 +8,7 @@ ENV PACKAGES apt-utils \
libpng-dev \
uuid-dev \
libmysqlclient-dev \
+ procps \
rsync
diff --git a/src/docker_modules/umi_tools/1.0.0/Dockerfile b/src/docker_modules/umi_tools/1.0.0/Dockerfile
index 877261ac..35b5f3f9 100644
--- a/src/docker_modules/umi_tools/1.0.0/Dockerfile
+++ b/src/docker_modules/umi_tools/1.0.0/Dockerfile
@@ -5,6 +5,7 @@ ENV UMI_TOOLS_VERSION=1.0.0
ENV PACKAGES bash \
python3 \
python3-pip \
+ procps \
gcc
RUN apt update && \
diff --git a/src/docker_modules/urqt/d62c1f8/Dockerfile b/src/docker_modules/urqt/d62c1f8/Dockerfile
index 0a08520a..9b54a7eb 100644
--- a/src/docker_modules/urqt/d62c1f8/Dockerfile
+++ b/src/docker_modules/urqt/d62c1f8/Dockerfile
@@ -5,6 +5,7 @@ ENV URQT_VERSION=d62c1f8
ENV PACKAGES git=1:2.17* \
build-essential=12.4* \
ca-certificates=20180409 \
+ procps \
zlib1g-dev=1:1.2.11*
RUN apt-get update && \
--
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