From b300770d1bba528a198fbcd5c2a52b4386d555df Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Tue, 13 Jul 2021 09:19:20 +0200
Subject: [PATCH] kb: add libcurl to dockerfile
---
src/.docker_modules/kb/0.26.3/Dockerfile | 5 ++++-
1 file changed, 4 insertions(+), 1 deletion(-)
diff --git a/src/.docker_modules/kb/0.26.3/Dockerfile b/src/.docker_modules/kb/0.26.3/Dockerfile
index 8ca889e8..9249cfc3 100644
--- a/src/.docker_modules/kb/0.26.3/Dockerfile
+++ b/src/.docker_modules/kb/0.26.3/Dockerfile
@@ -2,7 +2,10 @@ FROM python:3.9-slim
ENV KB_VERSION="0.26.3"
-RUN apt update && apt install -y procps && pip3 install kb-python==${KB_VERSION} gffutils==0.10.1
+RUN apt update && apt install -y procps make gcc zlib1g-dev libbz2-dev libcurl4 liblzma-dev \
+ && pip install --upgrade pip \
+ && pip3 install anndata h5py Jinja2 loompy nbconvert nbformat ngs-tools numpy pandas plotly scanpy scikit-learn tqdm \
+ && pip3 install kb-python==${KB_VERSION} gffutils
COPY t2g.py /usr/bin/
--
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