diff --git a/src/.docker_modules/kb/0.26.3/Dockerfile b/src/.docker_modules/kb/0.26.3/Dockerfile index 8ca889e8ba7af9517a322070c797279dd6114742..9249cfc3729b499d9943a08d69119688eb5a154d 100644 --- a/src/.docker_modules/kb/0.26.3/Dockerfile +++ b/src/.docker_modules/kb/0.26.3/Dockerfile @@ -2,7 +2,10 @@ FROM python:3.9-slim ENV KB_VERSION="0.26.3" -RUN apt update && apt install -y procps && pip3 install kb-python==${KB_VERSION} gffutils==0.10.1 +RUN apt update && apt install -y procps make gcc zlib1g-dev libbz2-dev libcurl4 liblzma-dev \ + && pip install --upgrade pip \ + && pip3 install anndata h5py Jinja2 loompy nbconvert nbformat ngs-tools numpy pandas plotly scanpy scikit-learn tqdm \ + && pip3 install kb-python==${KB_VERSION} gffutils COPY t2g.py /usr/bin/