From b2f88ee7ff4d3a035046e2d3eeb8e073dd6884ca Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Tue, 13 Apr 2021 18:01:40 +0200
Subject: [PATCH] kallisto: fix typo :15
---
src/nf_modules/kallisto/main.nf | 13 +++++++++----
1 file changed, 9 insertions(+), 4 deletions(-)
diff --git a/src/nf_modules/kallisto/main.nf b/src/nf_modules/kallisto/main.nf
index 19087331..f8221f03 100644
--- a/src/nf_modules/kallisto/main.nf
+++ b/src/nf_modules/kallisto/main.nf
@@ -12,7 +12,7 @@ process index_fasta {
}
input:
- tuble val(file_id), path(fasta)
+ tuple val(file_id), path(fasta)
output:
tuple val(file_id), path("*.index*"), emit: index
@@ -37,13 +37,18 @@ process mapping_fastq {
input:
tuple val(index_id), path(index)
- tuple val(pair_id), path(reads)
+ tuple val(file_id), path(reads)
output:
- tuple val(pair_id), path("${pair_id}"), emit: counts
- tuple val(pair_id), path("*_report.txt"), emit: report
+ tuple val(file_id), path("${pair_id}"), emit: counts
+ tuple val(file_id), path("*_report.txt"), emit: report
script:
+if (file_id instanceof List){
+ pair_id = file_id[0]
+} else {
+ pair_id = file_id
+}
if (reads instanceof List)
"""
--
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