From b25300b23a3c5e2a4a32c3940b4e1bd48fb75f44 Mon Sep 17 00:00:00 2001 From: Laurent Modolo <laurent.modolo@ens-lyon.fr> Date: Tue, 12 Oct 2021 12:21:32 +0200 Subject: [PATCH] docker: add crossbuild for every tools --- src/.docker_modules/agat/0.8.0/docker_init.sh | 4 ++-- src/.docker_modules/alntools/dd96682/docker_init.sh | 4 ++-- src/.docker_modules/bamutils/1.0.14/docker_init.sh | 4 ++-- src/.docker_modules/bcftools/1.7/docker_init.sh | 4 ++-- src/.docker_modules/bedops/2.4.39/docker_init.sh | 4 ++-- src/.docker_modules/bedtools/2.25.0/docker_init.sh | 4 ++-- src/.docker_modules/bedtools/2.30.0/docker_init.sh | 4 ++-- src/.docker_modules/bioawk/1.0/docker_init.sh | 4 ++-- src/.docker_modules/bioconvert/0.4.0/docker_init.sh | 4 ++-- src/.docker_modules/bioconvert/0.4.3/docker_init.sh | 4 ++-- src/.docker_modules/bowtie/1.2.2/docker_init.sh | 4 ++-- src/.docker_modules/bowtie2/2.3.4.1/docker_init.sh | 4 ++-- src/.docker_modules/bwa/0.7.17/docker_init.sh | 4 ++-- src/.docker_modules/canu/1.6/docker_init.sh | 4 ++-- src/.docker_modules/crossmap/0.4.1/docker_init.sh | 4 ++-- src/.docker_modules/cutadapt/1.14/docker_init.sh | 4 ++-- src/.docker_modules/cutadapt/1.15/docker_init.sh | 4 ++-- src/.docker_modules/cutadapt/2.1/docker_init.sh | 4 ++-- src/.docker_modules/danpos3/2f7f223/docker_init.sh | 4 ++-- src/.docker_modules/deeptools/3.0.2/docker_init.sh | 4 ++-- src/.docker_modules/deeptools/3.1.1/docker_init.sh | 4 ++-- src/.docker_modules/deeptools/3.5.0/docker_init.sh | 4 ++-- src/.docker_modules/deeptools/3.5.1/docker_init.sh | 4 ++-- src/.docker_modules/emase-zero/0.3.1/docker_init.sh | 4 ++-- src/.docker_modules/emase/0.10.16/docker_init.sh | 4 ++-- src/.docker_modules/fastp/0.19.7/docker_init.sh | 4 ++-- src/.docker_modules/fastp/0.20.1/docker_init.sh | 4 ++-- src/.docker_modules/fastqc/0.11.5/docker_init.sh | 4 ++-- src/.docker_modules/file_handle/0.1.1/docker_init.sh | 4 ++-- src/.docker_modules/flexi_splitter/1.0.2/docker_init.sh | 4 ++-- src/.docker_modules/freebayes/1.3.2/docker_init.sh | 4 ++-- src/.docker_modules/g2gtools/0.2.7/docker_init.sh | 4 ++-- src/.docker_modules/g2gtools/0.2.8/docker_init.sh | 4 ++-- src/.docker_modules/gatk/3.8.0/docker_init.sh | 4 ++-- src/.docker_modules/gatk/4.0.8.1/docker_init.sh | 4 ++-- src/.docker_modules/gffread/0.11.8/docker_init.sh | 4 ++-- src/.docker_modules/gffread/0.12.2/docker_init.sh | 4 ++-- src/.docker_modules/hisat2/2.0.0/docker_init.sh | 4 ++-- src/.docker_modules/hisat2/2.1.0/docker_init.sh | 4 ++-- src/.docker_modules/htseq/0.11.2/docker_init.sh | 2 +- src/.docker_modules/htseq/0.13.5/docker_init.sh | 4 ++-- src/.docker_modules/htseq/0.8.0/docker_init.sh | 4 ++-- src/.docker_modules/kallisto/0.43.1/docker_init.sh | 4 ++-- src/.docker_modules/kallisto/0.44.0/docker_init.sh | 4 ++-- src/.docker_modules/kallistobustools/0.24.4/docker_init.sh | 4 ++-- src/.docker_modules/kallistobustools/0.39.3/docker_init.sh | 4 ++-- src/.docker_modules/kb/0.26.0/docker_init.sh | 4 ++-- src/.docker_modules/kb/0.26.3/docker_init.sh | 4 ++-- src/.docker_modules/last/1060/docker_init.sh | 4 ++-- src/.docker_modules/liftover/357/docker_init.sh | 4 ++-- src/.docker_modules/macs2/2.1.2/docker_init.sh | 4 ++-- src/.docker_modules/macs3/3.0.0a6/docker_init.sh | 4 ++-- src/.docker_modules/minimap2/2.17/docker_init.sh | 4 ++-- src/.docker_modules/multiqc/1.0/docker_init.sh | 4 ++-- src/.docker_modules/multiqc/1.7/docker_init.sh | 4 ++-- src/.docker_modules/multiqc/1.9/docker_init.sh | 4 ++-- src/.docker_modules/music/6613c53/docker_init.sh | 4 ++-- src/.docker_modules/pandoc/2.11/docker_init.sh | 4 ++-- src/.docker_modules/picard/2.18.11/docker_init.sh | 4 ++-- src/.docker_modules/pigz/2.4/docker_init.sh | 4 ++-- src/.docker_modules/python/3.8/docker_init.sh | 4 ++-- src/.docker_modules/r-base/3.5.3/docker_init.sh | 4 ++-- src/.docker_modules/r-base/3.6.2/docker_init.sh | 4 ++-- src/.docker_modules/r-base/4.0.0/docker_init.sh | 4 ++-- src/.docker_modules/r-base/4.0.2/docker_init.sh | 4 ++-- src/.docker_modules/r-base/4.0.3/docker_init.sh | 4 ++-- src/.docker_modules/rasusa/0.6.0/docker_init.sh | 4 ++-- src/.docker_modules/ribotricer/1.3.2/docker_init.sh | 4 ++-- src/.docker_modules/rsem/1.3.0/docker_init.sh | 4 ++-- src/.docker_modules/sabre/039a55e/docker_init.sh | 4 ++-- src/.docker_modules/salmon/0.8.2/docker_init.sh | 4 ++-- src/.docker_modules/sambamba/0.6.7/docker_init.sh | 4 ++-- src/.docker_modules/sambamba/0.6.9/docker_init.sh | 4 ++-- src/.docker_modules/samblaster/0.1.24/docker_init.sh | 4 ++-- src/.docker_modules/samtools/1.11/docker_init.sh | 4 ++-- src/.docker_modules/samtools/1.7/docker_init.sh | 4 ++-- src/.docker_modules/sratoolkit/2.8.2/docker_init.sh | 4 ++-- src/.docker_modules/star/2.5.3/docker_init.sh | 4 ++-- src/.docker_modules/star/2.7.3a/docker_init.sh | 4 ++-- src/.docker_modules/subread/1.6.4/docker_init.sh | 4 ++-- src/.docker_modules/tophat/2.1.1/docker_init.sh | 4 ++-- src/.docker_modules/trimmomatic/0.36/docker_init.sh | 4 ++-- src/.docker_modules/ucsc/375/docker_init.sh | 4 ++-- src/.docker_modules/ucsc/400/docker_init.sh | 4 ++-- src/.docker_modules/ucsc/407/docker_init.sh | 4 ++-- src/.docker_modules/umi_tools/0.5.4/docker_init.sh | 4 ++-- src/.docker_modules/umi_tools/1.0.0/docker_init.sh | 4 ++-- src/.docker_modules/urqt/d62c1f8/docker_init.sh | 4 ++-- 88 files changed, 175 insertions(+), 175 deletions(-) diff --git a/src/.docker_modules/agat/0.8.0/docker_init.sh b/src/.docker_modules/agat/0.8.0/docker_init.sh index c95192b1..ef8ca5cf 100755 --- a/src/.docker_modules/agat/0.8.0/docker_init.sh +++ b/src/.docker_modules/agat/0.8.0/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/agat:0.8.0 -docker build src/.docker_modules/agat/0.8.0 -t 'lbmc/agat:0.8.0' -docker push lbmc/agat:0.8.0 +# docker build src/.docker_modules/agat/0.8.0 -t 'lbmc/agat:0.8.0' +# docker push lbmc/agat:0.8.0 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/agat:0.8.0" --push src/.docker_modules/agat/0.8.0 diff --git a/src/.docker_modules/alntools/dd96682/docker_init.sh b/src/.docker_modules/alntools/dd96682/docker_init.sh index ffd9af45..da1f1c97 100755 --- a/src/.docker_modules/alntools/dd96682/docker_init.sh +++ b/src/.docker_modules/alntools/dd96682/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/alntools:dd96682 -docker build src/.docker_modules/alntools/dd96682 -t 'lbmc/alntools:dd96682' -docker push lbmc/alntools:dd96682 +# docker build src/.docker_modules/alntools/dd96682 -t 'lbmc/alntools:dd96682' +# docker push lbmc/alntools:dd96682 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/alntools:dd96682" --push src/.docker_modules/alntools/dd96682 diff --git a/src/.docker_modules/bamutils/1.0.14/docker_init.sh b/src/.docker_modules/bamutils/1.0.14/docker_init.sh index aeed650e..d89d2e5f 100755 --- a/src/.docker_modules/bamutils/1.0.14/docker_init.sh +++ b/src/.docker_modules/bamutils/1.0.14/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/bamutils:1.0.14 -docker build src/.docker_modules/bamutils/1.0.14 -t 'lbmc/bamutils:1.0.14' -docker push lbmc/bamutils:1.0.14 +# docker build src/.docker_modules/bamutils/1.0.14 -t 'lbmc/bamutils:1.0.14' +# docker push lbmc/bamutils:1.0.14 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/bamutils:1.0.14" --push src/.docker_modules/bamutils/1.0.14 diff --git a/src/.docker_modules/bcftools/1.7/docker_init.sh b/src/.docker_modules/bcftools/1.7/docker_init.sh index 461e7cb4..55cab990 100755 --- a/src/.docker_modules/bcftools/1.7/docker_init.sh +++ b/src/.docker_modules/bcftools/1.7/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/bcftools:1.7 -docker build src/.docker_modules/bcftools/1.7 -t 'lbmc/bcftools:1.7' -docker push lbmc/bcftools:1.7 +# docker build src/.docker_modules/bcftools/1.7 -t 'lbmc/bcftools:1.7' +# docker push lbmc/bcftools:1.7 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/bcftools:1.7" --push src/.docker_modules/bcftools/1.7 diff --git a/src/.docker_modules/bedops/2.4.39/docker_init.sh b/src/.docker_modules/bedops/2.4.39/docker_init.sh index 7a69d8cf..0c1ff388 100755 --- a/src/.docker_modules/bedops/2.4.39/docker_init.sh +++ b/src/.docker_modules/bedops/2.4.39/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/bedops:2.4.39 -docker build src/.docker_modules/bedops/2.4.39 -t 'lbmc/bedops:2.4.39' -docker push lbmc/bedops:2.4.39 +# docker build src/.docker_modules/bedops/2.4.39 -t 'lbmc/bedops:2.4.39' +# docker push lbmc/bedops:2.4.39 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/bedops:2.4.39" --push src/.docker_modules/bedops/2.4.39 diff --git a/src/.docker_modules/bedtools/2.25.0/docker_init.sh b/src/.docker_modules/bedtools/2.25.0/docker_init.sh index a4235582..750ceb54 100755 --- a/src/.docker_modules/bedtools/2.25.0/docker_init.sh +++ b/src/.docker_modules/bedtools/2.25.0/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/bedtools:2.25.0 -docker build src/.docker_modules/bedtools/2.25.0 -t 'lbmc/bedtools:2.25.0' -docker push lbmc/bedtools:2.25.0 +# docker build src/.docker_modules/bedtools/2.25.0 -t 'lbmc/bedtools:2.25.0' +# docker push lbmc/bedtools:2.25.0 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/bedtools:2.25.0" --push src/.docker_modules/bedtools/2.25.0 diff --git a/src/.docker_modules/bedtools/2.30.0/docker_init.sh b/src/.docker_modules/bedtools/2.30.0/docker_init.sh index 60b82b0f..fa7f1fde 100755 --- a/src/.docker_modules/bedtools/2.30.0/docker_init.sh +++ b/src/.docker_modules/bedtools/2.30.0/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/bedtools:2.30.0 -docker build src/.docker_modules/bedtools/2.30.0 -t 'lbmc/bedtools:2.30.0' -docker push lbmc/bedtools:2.30.0 +# docker build src/.docker_modules/bedtools/2.30.0 -t 'lbmc/bedtools:2.30.0' +# docker push lbmc/bedtools:2.30.0 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/bedtools:2.30.0" --push src/.docker_modules/bedtools/2.30.0 diff --git a/src/.docker_modules/bioawk/1.0/docker_init.sh b/src/.docker_modules/bioawk/1.0/docker_init.sh index ae38353b..830fcf6b 100755 --- a/src/.docker_modules/bioawk/1.0/docker_init.sh +++ b/src/.docker_modules/bioawk/1.0/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/bioawk:1.0 -docker build src/.docker_modules/bioawk/1.0 -t 'lbmc/bioawk:1.0' -docker push lbmc/bioawk:1.0 +# docker build src/.docker_modules/bioawk/1.0 -t 'lbmc/bioawk:1.0' +# docker push lbmc/bioawk:1.0 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/bioawk:1.0" --push src/.docker_modules/bioawk/1.0 diff --git a/src/.docker_modules/bioconvert/0.4.0/docker_init.sh b/src/.docker_modules/bioconvert/0.4.0/docker_init.sh index 765655af..0323c1bc 100755 --- a/src/.docker_modules/bioconvert/0.4.0/docker_init.sh +++ b/src/.docker_modules/bioconvert/0.4.0/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/bioconvert:0.4.0 -docker build src/.docker_modules/bioconvert/0.4.0 -t 'lbmc/bioconvert:0.4.0' -docker push lbmc/bioconvert:0.4.0 +# docker build src/.docker_modules/bioconvert/0.4.0 -t 'lbmc/bioconvert:0.4.0' +# docker push lbmc/bioconvert:0.4.0 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/bioconvert:0.4.0" --push src/.docker_modules/bioconvert/0.4.0 diff --git a/src/.docker_modules/bioconvert/0.4.3/docker_init.sh b/src/.docker_modules/bioconvert/0.4.3/docker_init.sh index d8e7bd90..cbc76d9b 100755 --- a/src/.docker_modules/bioconvert/0.4.3/docker_init.sh +++ b/src/.docker_modules/bioconvert/0.4.3/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/bioconvert:0.4.3 -docker build src/.docker_modules/bioconvert/0.4.3 -t 'lbmc/bioconvert:0.4.3' -docker push lbmc/bioconvert:0.4.3 +# docker build src/.docker_modules/bioconvert/0.4.3 -t 'lbmc/bioconvert:0.4.3' +# docker push lbmc/bioconvert:0.4.3 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/bioconvert:0.4.3" --push src/.docker_modules/bioconvert/0.4.3 diff --git a/src/.docker_modules/bowtie/1.2.2/docker_init.sh b/src/.docker_modules/bowtie/1.2.2/docker_init.sh index 44284375..5bf220b3 100755 --- a/src/.docker_modules/bowtie/1.2.2/docker_init.sh +++ b/src/.docker_modules/bowtie/1.2.2/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/bowtie:1.2.2 -docker build src/.docker_modules/bowtie/1.2.2 -t 'lbmc/bowtie:1.2.2' -docker push lbmc/bowtie:1.2.2 +# docker build src/.docker_modules/bowtie/1.2.2 -t 'lbmc/bowtie:1.2.2' +# docker push lbmc/bowtie:1.2.2 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/bowtie:1.2.2" --push src/.docker_modules/bowtie/1.2.2 diff --git a/src/.docker_modules/bowtie2/2.3.4.1/docker_init.sh b/src/.docker_modules/bowtie2/2.3.4.1/docker_init.sh index 6cc6678e..26603936 100755 --- a/src/.docker_modules/bowtie2/2.3.4.1/docker_init.sh +++ b/src/.docker_modules/bowtie2/2.3.4.1/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/bowtie2:2.3.4.1 -docker build src/.docker_modules/bowtie2/2.3.4.1 -t 'lbmc/bowtie2:2.3.4.1' -docker push lbmc/bowtie2:2.3.4.1 +# docker build src/.docker_modules/bowtie2/2.3.4.1 -t 'lbmc/bowtie2:2.3.4.1' +# docker push lbmc/bowtie2:2.3.4.1 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/bowtie2:2.3.4.1" --push src/.docker_modules/bowtie2/2.3.4.1 diff --git a/src/.docker_modules/bwa/0.7.17/docker_init.sh b/src/.docker_modules/bwa/0.7.17/docker_init.sh index 1e0e2ed5..d50fafd8 100755 --- a/src/.docker_modules/bwa/0.7.17/docker_init.sh +++ b/src/.docker_modules/bwa/0.7.17/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/bwa:0.7.17 -docker build src/.docker_modules/bwa/0.7.17 -t 'lbmc/bwa:0.7.17' -docker push lbmc/bwa:0.7.17 +# docker build src/.docker_modules/bwa/0.7.17 -t 'lbmc/bwa:0.7.17' +# docker push lbmc/bwa:0.7.17 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/bwa:0.7.17" --push src/.docker_modules/bwa/0.7.17 diff --git a/src/.docker_modules/canu/1.6/docker_init.sh b/src/.docker_modules/canu/1.6/docker_init.sh index b1e01613..58df4728 100755 --- a/src/.docker_modules/canu/1.6/docker_init.sh +++ b/src/.docker_modules/canu/1.6/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/canu:1.6 -docker build src/.docker_modules/canu/1.6 -t 'lbmc/canu:1.6' -docker push lbmc/canu:1.6 +# docker build src/.docker_modules/canu/1.6 -t 'lbmc/canu:1.6' +# docker push lbmc/canu:1.6 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/canu:1.6" --push src/.docker_modules/canu/1.6 diff --git a/src/.docker_modules/crossmap/0.4.1/docker_init.sh b/src/.docker_modules/crossmap/0.4.1/docker_init.sh index 0e7c1a3c..a85ae11e 100755 --- a/src/.docker_modules/crossmap/0.4.1/docker_init.sh +++ b/src/.docker_modules/crossmap/0.4.1/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/crossmap:0.4.1 -docker build src/.docker_modules/crossmap/0.4.1/ -t 'lbmc/crossmap:0.4.1' -docker push lbmc/crossmap:0.4.1 +# docker build src/.docker_modules/crossmap/0.4.1/ -t 'lbmc/crossmap:0.4.1' +# docker push lbmc/crossmap:0.4.1 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/crossmap:0.4.1" --push src/.docker_modules/crossmap/0.4.1 diff --git a/src/.docker_modules/cutadapt/1.14/docker_init.sh b/src/.docker_modules/cutadapt/1.14/docker_init.sh index 82137eb6..8febfd80 100755 --- a/src/.docker_modules/cutadapt/1.14/docker_init.sh +++ b/src/.docker_modules/cutadapt/1.14/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/cutadapt:1.14 -docker build src/.docker_modules/cutadapt/1.14 -t 'lbmc/cutadapt:1.14' -docker push lbmc/cutadapt:1.14 +# docker build src/.docker_modules/cutadapt/1.14 -t 'lbmc/cutadapt:1.14' +# docker push lbmc/cutadapt:1.14 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/cutadapt:1.14" --push src/.docker_modules/cutadapt/1.14 diff --git a/src/.docker_modules/cutadapt/1.15/docker_init.sh b/src/.docker_modules/cutadapt/1.15/docker_init.sh index 84888c99..5f5b3c77 100755 --- a/src/.docker_modules/cutadapt/1.15/docker_init.sh +++ b/src/.docker_modules/cutadapt/1.15/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/cutadapt:1.15 -docker build src/.docker_modules/cutadapt/1.15 -t 'lbmc/cutadapt:1.15' -docker push lbmc/cutadapt:1.15 +# docker build src/.docker_modules/cutadapt/1.15 -t 'lbmc/cutadapt:1.15' +# docker push lbmc/cutadapt:1.15 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/cutadapt:1.15" --push src/.docker_modules/cutadapt/1.15 diff --git a/src/.docker_modules/cutadapt/2.1/docker_init.sh b/src/.docker_modules/cutadapt/2.1/docker_init.sh index e9c256c6..2b631f0f 100755 --- a/src/.docker_modules/cutadapt/2.1/docker_init.sh +++ b/src/.docker_modules/cutadapt/2.1/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/cutadapt:2.1 -docker build src/.docker_modules/cutadapt/2.1 -t 'lbmc/cutadapt:2.1' -docker push lbmc/cutadapt:2.1 +# docker build src/.docker_modules/cutadapt/2.1 -t 'lbmc/cutadapt:2.1' +# docker push lbmc/cutadapt:2.1 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/cutadapt:2.1" --push src/.docker_modules/cutadapt/2.1 diff --git a/src/.docker_modules/danpos3/2f7f223/docker_init.sh b/src/.docker_modules/danpos3/2f7f223/docker_init.sh index c8514797..9c59d3e2 100755 --- a/src/.docker_modules/danpos3/2f7f223/docker_init.sh +++ b/src/.docker_modules/danpos3/2f7f223/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/danpos3:2f7f223 -docker build src/.docker_modules/danpos3/2f7f223 -t 'lbmc/danpos3:2f7f223' -docker push lbmc/danpos3:2f7f223 +# docker build src/.docker_modules/danpos3/2f7f223 -t 'lbmc/danpos3:2f7f223' +# docker push lbmc/danpos3:2f7f223 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/danpos3:2f7f223" --push src/.docker_modules/danpos3/2f7f223 diff --git a/src/.docker_modules/deeptools/3.0.2/docker_init.sh b/src/.docker_modules/deeptools/3.0.2/docker_init.sh index 659c591d..73ce8857 100755 --- a/src/.docker_modules/deeptools/3.0.2/docker_init.sh +++ b/src/.docker_modules/deeptools/3.0.2/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/deeptools:3.0.2 -docker build src/.docker_modules/deeptools/3.0.2 -t 'lbmc/deeptools:3.0.2' -docker push lbmc/deeptools:3.0.2 +# docker build src/.docker_modules/deeptools/3.0.2 -t 'lbmc/deeptools:3.0.2' +# docker push lbmc/deeptools:3.0.2 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/deeptools:3.0.2" --push src/.docker_modules/deeptools/3.0.2 diff --git a/src/.docker_modules/deeptools/3.1.1/docker_init.sh b/src/.docker_modules/deeptools/3.1.1/docker_init.sh index 2ca25d39..a367cac4 100755 --- a/src/.docker_modules/deeptools/3.1.1/docker_init.sh +++ b/src/.docker_modules/deeptools/3.1.1/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/deeptools:3.1.1 -docker build src/.docker_modules/deeptools/3.1.1 -t 'lbmc/deeptools:3.1.1' -docker push lbmc/deeptools:3.1.1 +# docker build src/.docker_modules/deeptools/3.1.1 -t 'lbmc/deeptools:3.1.1' +# docker push lbmc/deeptools:3.1.1 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/deeptools:3.1.1" --push src/.docker_modules/deeptools/3.1.1 diff --git a/src/.docker_modules/deeptools/3.5.0/docker_init.sh b/src/.docker_modules/deeptools/3.5.0/docker_init.sh index d79321bb..d31641fd 100755 --- a/src/.docker_modules/deeptools/3.5.0/docker_init.sh +++ b/src/.docker_modules/deeptools/3.5.0/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/deeptools:3.5.0 -docker build src/.docker_modules/deeptools/3.5.0 -t 'lbmc/deeptools:3.5.0' -docker push lbmc/deeptools:3.5.0 +# docker build src/.docker_modules/deeptools/3.5.0 -t 'lbmc/deeptools:3.5.0' +# docker push lbmc/deeptools:3.5.0 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/deeptools:3.5.0" --push src/.docker_modules/deeptools/3.5.0 diff --git a/src/.docker_modules/deeptools/3.5.1/docker_init.sh b/src/.docker_modules/deeptools/3.5.1/docker_init.sh index 4ebd81b8..304e9888 100755 --- a/src/.docker_modules/deeptools/3.5.1/docker_init.sh +++ b/src/.docker_modules/deeptools/3.5.1/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/deeptools:3.5.1 -docker build src/.docker_modules/deeptools/3.5.1 -t 'lbmc/deeptools:3.5.1' -docker push lbmc/deeptools:3.5.1 +# docker build src/.docker_modules/deeptools/3.5.1 -t 'lbmc/deeptools:3.5.1' +# docker push lbmc/deeptools:3.5.1 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/deeptools:3.5.1" --push src/.docker_modules/deeptools/3.5.1 diff --git a/src/.docker_modules/emase-zero/0.3.1/docker_init.sh b/src/.docker_modules/emase-zero/0.3.1/docker_init.sh index 8c95c720..3c929285 100755 --- a/src/.docker_modules/emase-zero/0.3.1/docker_init.sh +++ b/src/.docker_modules/emase-zero/0.3.1/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/emase-zero:0.3.1 -docker build src/.docker_modules/emase-zero/0.3.1 -t 'lbmc/emase-zero:0.3.1' -docker push lbmc/emase-zero:0.3.1 +# docker build src/.docker_modules/emase-zero/0.3.1 -t 'lbmc/emase-zero:0.3.1' +# docker push lbmc/emase-zero:0.3.1 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/emase-zero:0.3.1" --push src/.docker_modules/emase-zero/0.3.1 diff --git a/src/.docker_modules/emase/0.10.16/docker_init.sh b/src/.docker_modules/emase/0.10.16/docker_init.sh index f491473d..9fae4ac7 100755 --- a/src/.docker_modules/emase/0.10.16/docker_init.sh +++ b/src/.docker_modules/emase/0.10.16/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/emase:0.10.16 -docker build src/.docker_modules/emase/0.10.16 -t 'lbmc/emase:0.10.16' -docker push lbmc/emase:0.10.16 +# docker build src/.docker_modules/emase/0.10.16 -t 'lbmc/emase:0.10.16' +# docker push lbmc/emase:0.10.16 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/emase:0.10.16" --push src/.docker_modules/emase/0.10.16 diff --git a/src/.docker_modules/fastp/0.19.7/docker_init.sh b/src/.docker_modules/fastp/0.19.7/docker_init.sh index 962ed669..310e5aef 100755 --- a/src/.docker_modules/fastp/0.19.7/docker_init.sh +++ b/src/.docker_modules/fastp/0.19.7/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/fastp:0.19.7 -docker build src/.docker_modules/fastp/0.19.7 -t 'lbmc/fastp:0.19.7' -docker push lbmc/fastp:0.19.7 +# docker build src/.docker_modules/fastp/0.19.7 -t 'lbmc/fastp:0.19.7' +# docker push lbmc/fastp:0.19.7 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/fastp:0.19.7" --push src/.docker_modules/fastp/0.19.7 diff --git a/src/.docker_modules/fastp/0.20.1/docker_init.sh b/src/.docker_modules/fastp/0.20.1/docker_init.sh index 286eaf62..7310a935 100755 --- a/src/.docker_modules/fastp/0.20.1/docker_init.sh +++ b/src/.docker_modules/fastp/0.20.1/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/fastp:0.20.1 -docker build src/.docker_modules/fastp/0.20.1 -t 'lbmc/fastp:0.20.1' -docker push lbmc/fastp:0.20.1 +# docker build src/.docker_modules/fastp/0.20.1 -t 'lbmc/fastp:0.20.1' +# docker push lbmc/fastp:0.20.1 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/fastp:0.20.1" --push src/.docker_modules/fastp/0.20.1 diff --git a/src/.docker_modules/fastqc/0.11.5/docker_init.sh b/src/.docker_modules/fastqc/0.11.5/docker_init.sh index 06e57849..502bbd62 100755 --- a/src/.docker_modules/fastqc/0.11.5/docker_init.sh +++ b/src/.docker_modules/fastqc/0.11.5/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/fastqc:0.11.5 -docker build src/.docker_modules/fastqc/0.11.5 -t 'lbmc/fastqc:0.11.5' -docker push lbmc/fastqc:0.11.5 +# docker build src/.docker_modules/fastqc/0.11.5 -t 'lbmc/fastqc:0.11.5' +# docker push lbmc/fastqc:0.11.5 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/fastqc:0.11.5" --push src/.docker_modules/fastqc/0.11.5 diff --git a/src/.docker_modules/file_handle/0.1.1/docker_init.sh b/src/.docker_modules/file_handle/0.1.1/docker_init.sh index 767c2d8b..21c51ea0 100755 --- a/src/.docker_modules/file_handle/0.1.1/docker_init.sh +++ b/src/.docker_modules/file_handle/0.1.1/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/file_handle:0.1.1 -docker build src/.docker_modules/file_handle/0.1.1 -t 'lbmc/file_handle:0.1.1' -docker push lbmc/file_handle:0.1.1 +# docker build src/.docker_modules/file_handle/0.1.1 -t 'lbmc/file_handle:0.1.1' +# docker push lbmc/file_handle:0.1.1 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/file_handle:0.1.1" --push src/.docker_modules/file_handle/0.1.1 diff --git a/src/.docker_modules/flexi_splitter/1.0.2/docker_init.sh b/src/.docker_modules/flexi_splitter/1.0.2/docker_init.sh index 99af62fe..7f7c0e77 100755 --- a/src/.docker_modules/flexi_splitter/1.0.2/docker_init.sh +++ b/src/.docker_modules/flexi_splitter/1.0.2/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/flexi_splitter:1.0.2 -docker build src/.docker_modules/flexi_splitter/1.0.2 -t 'lbmc/flexi_splitter:1.0.2' -docker push lbmc/flexi_splitter:1.0.2 +# docker build src/.docker_modules/flexi_splitter/1.0.2 -t 'lbmc/flexi_splitter:1.0.2' +# docker push lbmc/flexi_splitter:1.0.2 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/flexi_splitter:1.0.2" --push src/.docker_modules/flexi_splitter/1.0.2 diff --git a/src/.docker_modules/freebayes/1.3.2/docker_init.sh b/src/.docker_modules/freebayes/1.3.2/docker_init.sh index f1e6ee06..2e754d0d 100755 --- a/src/.docker_modules/freebayes/1.3.2/docker_init.sh +++ b/src/.docker_modules/freebayes/1.3.2/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/freebayes:1.3.2 -docker build src/.docker_modules/freebayes/1.3.2/ -t 'lbmc/freebayes:1.3.2' -docker push lbmc/freebayes:1.3.2 +# docker build src/.docker_modules/freebayes/1.3.2/ -t 'lbmc/freebayes:1.3.2' +# docker push lbmc/freebayes:1.3.2 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/freebayes:1.3.2" --push src/.docker_modules/freebayes/1.3.2 diff --git a/src/.docker_modules/g2gtools/0.2.7/docker_init.sh b/src/.docker_modules/g2gtools/0.2.7/docker_init.sh index eb03c085..633690bc 100755 --- a/src/.docker_modules/g2gtools/0.2.7/docker_init.sh +++ b/src/.docker_modules/g2gtools/0.2.7/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/g2gtools:0.2.7 -docker build src/.docker_modules/g2gtools/0.2.7 -t 'lbmc/g2gtools:0.2.7' -docker push lbmc/g2gtools:0.2.7 +# docker build src/.docker_modules/g2gtools/0.2.7 -t 'lbmc/g2gtools:0.2.7' +# docker push lbmc/g2gtools:0.2.7 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/g2gtools:0.2.7" --push src/.docker_modules/g2gtools/0.2.7 diff --git a/src/.docker_modules/g2gtools/0.2.8/docker_init.sh b/src/.docker_modules/g2gtools/0.2.8/docker_init.sh index cd1ad5b9..d09df0f7 100755 --- a/src/.docker_modules/g2gtools/0.2.8/docker_init.sh +++ b/src/.docker_modules/g2gtools/0.2.8/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/g2gtools:0.2.8 -docker build src/.docker_modules/g2gtools/0.2.8 -t 'lbmc/g2gtools:0.2.8' -docker push lbmc/g2gtools:0.2.8 +# docker build src/.docker_modules/g2gtools/0.2.8 -t 'lbmc/g2gtools:0.2.8' +# docker push lbmc/g2gtools:0.2.8 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/g2gtools:0.2.8" --push src/.docker_modules/g2gtools/0.2.8 diff --git a/src/.docker_modules/gatk/3.8.0/docker_init.sh b/src/.docker_modules/gatk/3.8.0/docker_init.sh index 9ac6aa01..6378db27 100755 --- a/src/.docker_modules/gatk/3.8.0/docker_init.sh +++ b/src/.docker_modules/gatk/3.8.0/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/gatk:3.8.0 -docker build src/.docker_modules/gatk/3.8.0 -t 'lbmc/gatk:3.8.0' -docker push lbmc/gatk:3.8.0 +# docker build src/.docker_modules/gatk/3.8.0 -t 'lbmc/gatk:3.8.0' +# docker push lbmc/gatk:3.8.0 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/gatk:3.8.0" --push src/.docker_modules/gatk/3.8.0 diff --git a/src/.docker_modules/gatk/4.0.8.1/docker_init.sh b/src/.docker_modules/gatk/4.0.8.1/docker_init.sh index 54e5526c..38d06e39 100755 --- a/src/.docker_modules/gatk/4.0.8.1/docker_init.sh +++ b/src/.docker_modules/gatk/4.0.8.1/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/gatk:4.0.8.1 -docker build src/.docker_modules/gatk/4.0.8.1 -t 'lbmc/gatk:4.0.8.1' -docker push lbmc/gatk:4.0.8.1 +# docker build src/.docker_modules/gatk/4.0.8.1 -t 'lbmc/gatk:4.0.8.1' +# docker push lbmc/gatk:4.0.8.1 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/gatk:4.0.8.1" --push src/.docker_modules/gatk/4.0.8.1 diff --git a/src/.docker_modules/gffread/0.11.8/docker_init.sh b/src/.docker_modules/gffread/0.11.8/docker_init.sh index c9b4c9b8..e03cbd88 100755 --- a/src/.docker_modules/gffread/0.11.8/docker_init.sh +++ b/src/.docker_modules/gffread/0.11.8/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/gffread:0.11.8 -docker build src/.docker_modules/gffread/0.11.8 -t 'lbmc/gffread:0.11.8' -docker push lbmc/gffread:0.11.8 +# docker build src/.docker_modules/gffread/0.11.8 -t 'lbmc/gffread:0.11.8' +# docker push lbmc/gffread:0.11.8 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/gffread:0.11.8" --push src/.docker_modules/gffread/0.11.8 diff --git a/src/.docker_modules/gffread/0.12.2/docker_init.sh b/src/.docker_modules/gffread/0.12.2/docker_init.sh index 25c0959e..17408949 100755 --- a/src/.docker_modules/gffread/0.12.2/docker_init.sh +++ b/src/.docker_modules/gffread/0.12.2/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/gffread:0.12.2 -docker build src/.docker_modules/gffread/0.12.2 -t 'lbmc/gffread:0.12.2' -docker push lbmc/gffread:0.12.2 +# docker build src/.docker_modules/gffread/0.12.2 -t 'lbmc/gffread:0.12.2' +# docker push lbmc/gffread:0.12.2 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/gffread:0.12.2" --push src/.docker_modules/gffread/0.12.2 diff --git a/src/.docker_modules/hisat2/2.0.0/docker_init.sh b/src/.docker_modules/hisat2/2.0.0/docker_init.sh index dcf6c7d8..a09fc972 100755 --- a/src/.docker_modules/hisat2/2.0.0/docker_init.sh +++ b/src/.docker_modules/hisat2/2.0.0/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/hisat2:2.0.0 -docker build src/.docker_modules/hisat2/2.0.0 -t 'lbmc/hisat2:2.0.0' -docker push lbmc/hisat2:2.0.0 +# docker build src/.docker_modules/hisat2/2.0.0 -t 'lbmc/hisat2:2.0.0' +# docker push lbmc/hisat2:2.0.0 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/hisat2:2.0.0" --push src/.docker_modules/hisat2/2.0.0 diff --git a/src/.docker_modules/hisat2/2.1.0/docker_init.sh b/src/.docker_modules/hisat2/2.1.0/docker_init.sh index 62255bdc..4d541d32 100755 --- a/src/.docker_modules/hisat2/2.1.0/docker_init.sh +++ b/src/.docker_modules/hisat2/2.1.0/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/hisat2:2.1.0 -docker build src/.docker_modules/hisat2/2.1.0 -t 'lbmc/hisat2:2.1.0' -docker push lbmc/hisat2:2.1.0 +# docker build src/.docker_modules/hisat2/2.1.0 -t 'lbmc/hisat2:2.1.0' +# docker push lbmc/hisat2:2.1.0 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/hisat2:2.1.0" --push src/.docker_modules/hisat2/2.1.0 diff --git a/src/.docker_modules/htseq/0.11.2/docker_init.sh b/src/.docker_modules/htseq/0.11.2/docker_init.sh index b46f01de..9e2c73ea 100644 --- a/src/.docker_modules/htseq/0.11.2/docker_init.sh +++ b/src/.docker_modules/htseq/0.11.2/docker_init.sh @@ -1,2 +1,2 @@ #!/bin/sh -docker build src/docker_modules/HTSeq/0.11.2 -t 'htseq:0.11.2' +# docker build src/docker_modules/HTSeq/0.11.2 -t 'htseq:0.11.2' diff --git a/src/.docker_modules/htseq/0.13.5/docker_init.sh b/src/.docker_modules/htseq/0.13.5/docker_init.sh index 359f3935..00ad38fe 100755 --- a/src/.docker_modules/htseq/0.13.5/docker_init.sh +++ b/src/.docker_modules/htseq/0.13.5/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/htseq:0.13.5 -docker build src/.docker_modules/htseq/0.13.5 -t 'lbmc/htseq:0.13.5' -docker push lbmc/htseq:0.13.5 +# docker build src/.docker_modules/htseq/0.13.5 -t 'lbmc/htseq:0.13.5' +# docker push lbmc/htseq:0.13.5 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/htseq:0.13.5" --push src/.docker_modules/htseq/0.13.5 diff --git a/src/.docker_modules/htseq/0.8.0/docker_init.sh b/src/.docker_modules/htseq/0.8.0/docker_init.sh index 86295465..75352894 100755 --- a/src/.docker_modules/htseq/0.8.0/docker_init.sh +++ b/src/.docker_modules/htseq/0.8.0/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/htseq:0.8.0 -docker build src/.docker_modules/htseq/0.8.0 -t 'lbmc/htseq:0.8.0' -docker push lbmc/htseq:0.8.0 +# docker build src/.docker_modules/htseq/0.8.0 -t 'lbmc/htseq:0.8.0' +# docker push lbmc/htseq:0.8.0 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/htseq:0.8.0" --push src/.docker_modules/htseq/0.8.0 diff --git a/src/.docker_modules/kallisto/0.43.1/docker_init.sh b/src/.docker_modules/kallisto/0.43.1/docker_init.sh index 64e28a6f..b4043c71 100755 --- a/src/.docker_modules/kallisto/0.43.1/docker_init.sh +++ b/src/.docker_modules/kallisto/0.43.1/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/kallisto:0.43.1 -docker build src/.docker_modules/kallisto/0.43.1 -t 'lbmc/kallisto:0.43.1' -docker push lbmc/kallisto:0.43.1 +# docker build src/.docker_modules/kallisto/0.43.1 -t 'lbmc/kallisto:0.43.1' +# docker push lbmc/kallisto:0.43.1 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/kallisto:0.43.1" --push src/.docker_modules/kallisto/0.43.1 diff --git a/src/.docker_modules/kallisto/0.44.0/docker_init.sh b/src/.docker_modules/kallisto/0.44.0/docker_init.sh index 28f99917..e3670b68 100755 --- a/src/.docker_modules/kallisto/0.44.0/docker_init.sh +++ b/src/.docker_modules/kallisto/0.44.0/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/kallisto:0.44.0 -docker build src/.docker_modules/kallisto/0.44.0 -t 'lbmc/kallisto:0.44.0' -docker push lbmc/kallisto:0.44.0 +# docker build src/.docker_modules/kallisto/0.44.0 -t 'lbmc/kallisto:0.44.0' +# docker push lbmc/kallisto:0.44.0 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/kallisto:0.44.0" --push src/.docker_modules/kallisto/0.44.0 diff --git a/src/.docker_modules/kallistobustools/0.24.4/docker_init.sh b/src/.docker_modules/kallistobustools/0.24.4/docker_init.sh index fae31e99..bb0edc97 100755 --- a/src/.docker_modules/kallistobustools/0.24.4/docker_init.sh +++ b/src/.docker_modules/kallistobustools/0.24.4/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/kallistobustools:0.24.4 -docker build src/.docker_modules/kallistobustools/0.24.4 -t 'lbmc/kallistobustools:0.24.4' -docker push lbmc/kallistobustools:0.24.4 +# docker build src/.docker_modules/kallistobustools/0.24.4 -t 'lbmc/kallistobustools:0.24.4' +# docker push lbmc/kallistobustools:0.24.4 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/kallistobustools:0.24.4" --push src/.docker_modules/kallistobustools/0.24.4 diff --git a/src/.docker_modules/kallistobustools/0.39.3/docker_init.sh b/src/.docker_modules/kallistobustools/0.39.3/docker_init.sh index 9c93f944..9ba2835a 100755 --- a/src/.docker_modules/kallistobustools/0.39.3/docker_init.sh +++ b/src/.docker_modules/kallistobustools/0.39.3/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/kallistobustools:0.39.3 -docker build src/.docker_modules/kallistobustools/0.39.3 -t 'lbmc/kallistobustools:0.39.3' -docker push lbmc/kallistobustools:0.39.3 +# docker build src/.docker_modules/kallistobustools/0.39.3 -t 'lbmc/kallistobustools:0.39.3' +# docker push lbmc/kallistobustools:0.39.3 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/kallistobustools:0.39.3" --push src/.docker_modules/kallistobustools/0.39.3 diff --git a/src/.docker_modules/kb/0.26.0/docker_init.sh b/src/.docker_modules/kb/0.26.0/docker_init.sh index bb8e249c..45319149 100755 --- a/src/.docker_modules/kb/0.26.0/docker_init.sh +++ b/src/.docker_modules/kb/0.26.0/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/kb:0.26.0 -docker build src/.docker_modules/kb/0.26.0 -t 'lbmc/kb:0.26.0' -docker push lbmc/kb:0.26.0 +# docker build src/.docker_modules/kb/0.26.0 -t 'lbmc/kb:0.26.0' +# docker push lbmc/kb:0.26.0 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/kb:0.26.0" --push src/.docker_modules/kb/0.26.0 diff --git a/src/.docker_modules/kb/0.26.3/docker_init.sh b/src/.docker_modules/kb/0.26.3/docker_init.sh index a2fd7830..8104fc75 100755 --- a/src/.docker_modules/kb/0.26.3/docker_init.sh +++ b/src/.docker_modules/kb/0.26.3/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/kb:0.26.3 -docker build src/.docker_modules/kb/0.26.3 -t 'lbmc/kb:0.26.3' -docker push lbmc/kb:0.26.3 +# docker build src/.docker_modules/kb/0.26.3 -t 'lbmc/kb:0.26.3' +# docker push lbmc/kb:0.26.3 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/kb:0.26.3" --push src/.docker_modules/kb/0.26.3 diff --git a/src/.docker_modules/last/1060/docker_init.sh b/src/.docker_modules/last/1060/docker_init.sh index 8bc64e7c..e5682dfd 100755 --- a/src/.docker_modules/last/1060/docker_init.sh +++ b/src/.docker_modules/last/1060/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/last:1060 -docker build src/.docker_modules/last/1060/ -t 'lbmc/last:1060' -docker push lbmc/last:1060 +# docker build src/.docker_modules/last/1060/ -t 'lbmc/last:1060' +# docker push lbmc/last:1060 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/last:1060" --push src/.docker_modules/last/1060 diff --git a/src/.docker_modules/liftover/357/docker_init.sh b/src/.docker_modules/liftover/357/docker_init.sh index 882bfa2a..1f4da570 100755 --- a/src/.docker_modules/liftover/357/docker_init.sh +++ b/src/.docker_modules/liftover/357/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/liftover:357 -docker build src/.docker_modules/liftover/357/ -t 'lbmc/liftover:357' -docker push lbmc/liftover:357 +# docker build src/.docker_modules/liftover/357/ -t 'lbmc/liftover:357' +# docker push lbmc/liftover:357 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/liftover:357" --push src/.docker_modules/liftover/357 diff --git a/src/.docker_modules/macs2/2.1.2/docker_init.sh b/src/.docker_modules/macs2/2.1.2/docker_init.sh index 9208b02d..70f61fcd 100755 --- a/src/.docker_modules/macs2/2.1.2/docker_init.sh +++ b/src/.docker_modules/macs2/2.1.2/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/macs2:2.1.2 -docker build src/.docker_modules/macs2/2.1.2 -t 'lbmc/macs2:2.1.2' -docker push lbmc/macs2:2.1.2 +# docker build src/.docker_modules/macs2/2.1.2 -t 'lbmc/macs2:2.1.2' +# docker push lbmc/macs2:2.1.2 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/macs2:2.1.2" --push src/.docker_modules/macs2/2.1.2 diff --git a/src/.docker_modules/macs3/3.0.0a6/docker_init.sh b/src/.docker_modules/macs3/3.0.0a6/docker_init.sh index d3c07696..ab969f74 100755 --- a/src/.docker_modules/macs3/3.0.0a6/docker_init.sh +++ b/src/.docker_modules/macs3/3.0.0a6/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/macs3:3.0.0a6 -docker build src/.docker_modules/macs3/3.0.0a6 -t 'lbmc/macs3:3.0.0a6' -docker push lbmc/macs3:3.0.0a6 +# docker build src/.docker_modules/macs3/3.0.0a6 -t 'lbmc/macs3:3.0.0a6' +# docker push lbmc/macs3:3.0.0a6 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/macs3:3.0.0a6" --push src/.docker_modules/macs3/3.0.0a6 diff --git a/src/.docker_modules/minimap2/2.17/docker_init.sh b/src/.docker_modules/minimap2/2.17/docker_init.sh index b03f1d7f..c77f5b78 100755 --- a/src/.docker_modules/minimap2/2.17/docker_init.sh +++ b/src/.docker_modules/minimap2/2.17/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/minimap2:2.17 -docker build src/.docker_modules/minimap2/2.17 -t 'lbmc/minimap2:2.17' -docker push lbmc/minimap2:2.17 +# docker build src/.docker_modules/minimap2/2.17 -t 'lbmc/minimap2:2.17' +# docker push lbmc/minimap2:2.17 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/minimap2:2.17" --push src/.docker_modules/minimap2/2.17 diff --git a/src/.docker_modules/multiqc/1.0/docker_init.sh b/src/.docker_modules/multiqc/1.0/docker_init.sh index cdfd0e6d..a0098e2f 100755 --- a/src/.docker_modules/multiqc/1.0/docker_init.sh +++ b/src/.docker_modules/multiqc/1.0/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/multiqc:1.0 -docker build src/.docker_modules/multiqc/1.0 -t 'lbmc/multiqc:1.0' -docker push lbmc/multiqc:1.0 +# docker build src/.docker_modules/multiqc/1.0 -t 'lbmc/multiqc:1.0' +# docker push lbmc/multiqc:1.0 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/multiqc:1.0" --push src/.docker_modules/multiqc/1.0 diff --git a/src/.docker_modules/multiqc/1.7/docker_init.sh b/src/.docker_modules/multiqc/1.7/docker_init.sh index 078b2022..375f5a3b 100755 --- a/src/.docker_modules/multiqc/1.7/docker_init.sh +++ b/src/.docker_modules/multiqc/1.7/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/multiqc:1.7 -docker build src/.docker_modules/multiqc/1.7 -t 'lbmc/multiqc:1.7' -docker push lbmc/multiqc:1.7 +# docker build src/.docker_modules/multiqc/1.7 -t 'lbmc/multiqc:1.7' +# docker push lbmc/multiqc:1.7 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/multiqc:1.7" --push src/.docker_modules/multiqc/1.7 diff --git a/src/.docker_modules/multiqc/1.9/docker_init.sh b/src/.docker_modules/multiqc/1.9/docker_init.sh index 6dd013ff..b47d3cde 100755 --- a/src/.docker_modules/multiqc/1.9/docker_init.sh +++ b/src/.docker_modules/multiqc/1.9/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/multiqc:1.9 -docker build src/.docker_modules/multiqc/1.9 -t 'lbmc/multiqc:1.9' -docker push lbmc/multiqc:1.9 +# docker build src/.docker_modules/multiqc/1.9 -t 'lbmc/multiqc:1.9' +# docker push lbmc/multiqc:1.9 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/multiqc:1.9" --push src/.docker_modules/multiqc/1.9 diff --git a/src/.docker_modules/music/6613c53/docker_init.sh b/src/.docker_modules/music/6613c53/docker_init.sh index 47bc585a..9ef317a1 100755 --- a/src/.docker_modules/music/6613c53/docker_init.sh +++ b/src/.docker_modules/music/6613c53/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/music:6613c53 -docker build src/.docker_modules/music/6613c53 -t 'lbmc/music:6613c53' -docker push lbmc/music:6613c53 +# docker build src/.docker_modules/music/6613c53 -t 'lbmc/music:6613c53' +# docker push lbmc/music:6613c53 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/music:6613c53" --push src/.docker_modules/music/6613c53 diff --git a/src/.docker_modules/pandoc/2.11/docker_init.sh b/src/.docker_modules/pandoc/2.11/docker_init.sh index 7d1f34b7..309f146d 100755 --- a/src/.docker_modules/pandoc/2.11/docker_init.sh +++ b/src/.docker_modules/pandoc/2.11/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/pandoc:2.11 -docker build src/.docker_modules/pandoc/2.11 -t 'lbmc/pandoc:2.11' -docker push lbmc/pandoc:2.11 +# docker build src/.docker_modules/pandoc/2.11 -t 'lbmc/pandoc:2.11' +# docker push lbmc/pandoc:2.11 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/pandoc:2.11" --push src/.docker_modules/pandoc/2.11 diff --git a/src/.docker_modules/picard/2.18.11/docker_init.sh b/src/.docker_modules/picard/2.18.11/docker_init.sh index 868e20f9..6e77b810 100755 --- a/src/.docker_modules/picard/2.18.11/docker_init.sh +++ b/src/.docker_modules/picard/2.18.11/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/picard:2.18.11 -docker build src/.docker_modules/picard/2.18.11 -t 'lbmc/picard:2.18.11' -docker push lbmc/picard:2.18.11 +# docker build src/.docker_modules/picard/2.18.11 -t 'lbmc/picard:2.18.11' +# docker push lbmc/picard:2.18.11 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/picard:2.18.11" --push src/.docker_modules/picard/2.18.11 diff --git a/src/.docker_modules/pigz/2.4/docker_init.sh b/src/.docker_modules/pigz/2.4/docker_init.sh index ac9ff43b..2925b0b6 100755 --- a/src/.docker_modules/pigz/2.4/docker_init.sh +++ b/src/.docker_modules/pigz/2.4/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/pigz:2.4 -docker build src/.docker_modules/pigz/2.4 -t 'lbmc/pigz:2.4' -docker push lbmc/pigz:2.4 +# docker build src/.docker_modules/pigz/2.4 -t 'lbmc/pigz:2.4' +# docker push lbmc/pigz:2.4 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/pigz:2.4" --push src/.docker_modules/pigz/2.4 diff --git a/src/.docker_modules/python/3.8/docker_init.sh b/src/.docker_modules/python/3.8/docker_init.sh index f1cec5f5..29a251fc 100755 --- a/src/.docker_modules/python/3.8/docker_init.sh +++ b/src/.docker_modules/python/3.8/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/python:3.8 -docker build src/.docker_modules/python/3.8 -t 'lbmc/python:3.8' -docker push lbmc/python:3.8 +# docker build src/.docker_modules/python/3.8 -t 'lbmc/python:3.8' +# docker push lbmc/python:3.8 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/python:3.8" --push src/.docker_modules/python/3.8 diff --git a/src/.docker_modules/r-base/3.5.3/docker_init.sh b/src/.docker_modules/r-base/3.5.3/docker_init.sh index c6720918..7e0a931b 100755 --- a/src/.docker_modules/r-base/3.5.3/docker_init.sh +++ b/src/.docker_modules/r-base/3.5.3/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/r:3.5.3 -docker build src/.docker_modules/r-base/3.5.3 -t 'lbmc/r:3.5.3' -docker push lbmc/r:3.5.3 +# docker build src/.docker_modules/r-base/3.5.3 -t 'lbmc/r:3.5.3' +# docker push lbmc/r:3.5.3 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/r:3.5.3" --push src/.docker_modules/r/3.5.3 diff --git a/src/.docker_modules/r-base/3.6.2/docker_init.sh b/src/.docker_modules/r-base/3.6.2/docker_init.sh index 4338883f..29a3ea67 100755 --- a/src/.docker_modules/r-base/3.6.2/docker_init.sh +++ b/src/.docker_modules/r-base/3.6.2/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/r-base:3.6.2 -docker build src/.docker_modules/r-base/3.6.2 -t 'lbmc/r-base:3.6.2' -docker push lbmc/r-base:3.6.2 +# docker build src/.docker_modules/r-base/3.6.2 -t 'lbmc/r-base:3.6.2' +# docker push lbmc/r-base:3.6.2 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/r-base:3.6.2" --push src/.docker_modules/r-base/3.6.2 diff --git a/src/.docker_modules/r-base/4.0.0/docker_init.sh b/src/.docker_modules/r-base/4.0.0/docker_init.sh index 2a2572d1..d5010649 100755 --- a/src/.docker_modules/r-base/4.0.0/docker_init.sh +++ b/src/.docker_modules/r-base/4.0.0/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/r-base:4.0.0 -docker build src/.docker_modules/r-base/4.0.0 -t 'lbmc/r-base:4.0.0' -docker push lbmc/r-base:4.0.0 +# docker build src/.docker_modules/r-base/4.0.0 -t 'lbmc/r-base:4.0.0' +# docker push lbmc/r-base:4.0.0 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/r-base:4.0.0" --push src/.docker_modules/r-base/4.0.0 diff --git a/src/.docker_modules/r-base/4.0.2/docker_init.sh b/src/.docker_modules/r-base/4.0.2/docker_init.sh index 1e208135..7a5e7304 100755 --- a/src/.docker_modules/r-base/4.0.2/docker_init.sh +++ b/src/.docker_modules/r-base/4.0.2/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/r-base:4.0.2 -docker build src/.docker_modules/r-base/4.0.2 -t 'lbmc/r-base:4.0.2' -docker push lbmc/r-base:4.0.2 +# docker build src/.docker_modules/r-base/4.0.2 -t 'lbmc/r-base:4.0.2' +# docker push lbmc/r-base:4.0.2 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/r-base:4.0.2" --push src/.docker_modules/r-base/4.0.2 diff --git a/src/.docker_modules/r-base/4.0.3/docker_init.sh b/src/.docker_modules/r-base/4.0.3/docker_init.sh index edab4460..4679de3a 100755 --- a/src/.docker_modules/r-base/4.0.3/docker_init.sh +++ b/src/.docker_modules/r-base/4.0.3/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/r-base:4.0.3 -docker build src/.docker_modules/r-base/4.0.3 -t 'lbmc/r-base:4.0.3' -docker push lbmc/r-base:4.0.3 +# docker build src/.docker_modules/r-base/4.0.3 -t 'lbmc/r-base:4.0.3' +# docker push lbmc/r-base:4.0.3 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/r-base:4.0.3" --push src/.docker_modules/r-base/4.0.3 diff --git a/src/.docker_modules/rasusa/0.6.0/docker_init.sh b/src/.docker_modules/rasusa/0.6.0/docker_init.sh index 8bd909a3..4f920288 100755 --- a/src/.docker_modules/rasusa/0.6.0/docker_init.sh +++ b/src/.docker_modules/rasusa/0.6.0/docker_init.sh @@ -1,6 +1,6 @@ #!/bin/sh docker pull lbmc/rasusa:0.6.0 -docker build src/.docker_modules/rasusa/0.6.0 -t 'lbmc/rasusa:0.6.0' -docker push lbmc/rasusa:0.6.0 +# docker build src/.docker_modules/rasusa/0.6.0 -t 'lbmc/rasusa:0.6.0' +# docker push lbmc/rasusa:0.6.0 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/rasusa:0.6.0" --push src/.docker_modules/rasusa/0.6.0 docker buildx build --platform linux/amd64,linux/arm64 -t 'lbmc/rasusa:0.6.0' --push src/.docker_modules/rasusa/0.6.0 diff --git a/src/.docker_modules/ribotricer/1.3.2/docker_init.sh b/src/.docker_modules/ribotricer/1.3.2/docker_init.sh index e9fc65f8..b28b00c5 100644 --- a/src/.docker_modules/ribotricer/1.3.2/docker_init.sh +++ b/src/.docker_modules/ribotricer/1.3.2/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/ribotricer:1.3.2 -docker build src/.docker_modules/ribotricer/1.3.2 -t 'lbmc/ribotricer:1.3.2' -docker push lbmc/ribotricer:1.3.2 +# docker build src/.docker_modules/ribotricer/1.3.2 -t 'lbmc/ribotricer:1.3.2' +# docker push lbmc/ribotricer:1.3.2 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/ribotricer:1.3.2" --push src/.docker_modules/ribotricer/1.3.2 diff --git a/src/.docker_modules/rsem/1.3.0/docker_init.sh b/src/.docker_modules/rsem/1.3.0/docker_init.sh index dcbb11b5..56cdc1d9 100755 --- a/src/.docker_modules/rsem/1.3.0/docker_init.sh +++ b/src/.docker_modules/rsem/1.3.0/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/rsem:1.3.0 -docker build src/.docker_modules/rsem/1.3.0 -t 'lbmc/rsem:1.3.0' -docker push lbmc/rsem:1.3.0 +# docker build src/.docker_modules/rsem/1.3.0 -t 'lbmc/rsem:1.3.0' +# docker push lbmc/rsem:1.3.0 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/rsem:1.3.0" --push src/.docker_modules/rsem/1.3.0 diff --git a/src/.docker_modules/sabre/039a55e/docker_init.sh b/src/.docker_modules/sabre/039a55e/docker_init.sh index 3cf99f8b..b5aefa6b 100755 --- a/src/.docker_modules/sabre/039a55e/docker_init.sh +++ b/src/.docker_modules/sabre/039a55e/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/sabre:039a55e -docker build src/.docker_modules/sabre/039a55e -t 'lbmc/sabre:039a55e' -docker push lbmc/sabre:039a55e +# docker build src/.docker_modules/sabre/039a55e -t 'lbmc/sabre:039a55e' +# docker push lbmc/sabre:039a55e docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/sabre:039a55e" --push src/.docker_modules/sabre/039a55e diff --git a/src/.docker_modules/salmon/0.8.2/docker_init.sh b/src/.docker_modules/salmon/0.8.2/docker_init.sh index e1f10e5f..924c7d7b 100755 --- a/src/.docker_modules/salmon/0.8.2/docker_init.sh +++ b/src/.docker_modules/salmon/0.8.2/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/salmon:0.8.2 -docker build src/.docker_modules/salmon/0.8.2 -t 'lbmc/salmon:0.8.2' -docker push lbmc/salmon:0.8.2 +# docker build src/.docker_modules/salmon/0.8.2 -t 'lbmc/salmon:0.8.2' +# docker push lbmc/salmon:0.8.2 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/salmon:0.8.2" --push src/.docker_modules/salmon/0.8.2 diff --git a/src/.docker_modules/sambamba/0.6.7/docker_init.sh b/src/.docker_modules/sambamba/0.6.7/docker_init.sh index 37991e4a..07c8d05a 100755 --- a/src/.docker_modules/sambamba/0.6.7/docker_init.sh +++ b/src/.docker_modules/sambamba/0.6.7/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/sambamba:0.6.7 -docker build src/.docker_modules/sambamba/0.6.7 -t 'lbmc/sambamba:0.6.7' -docker push lbmc/sambamba:0.6.7 +# docker build src/.docker_modules/sambamba/0.6.7 -t 'lbmc/sambamba:0.6.7' +# docker push lbmc/sambamba:0.6.7 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/sambamba:0.6.7" --push src/.docker_modules/sambamba/0.6.7 diff --git a/src/.docker_modules/sambamba/0.6.9/docker_init.sh b/src/.docker_modules/sambamba/0.6.9/docker_init.sh index ca1f8065..4de76d66 100755 --- a/src/.docker_modules/sambamba/0.6.9/docker_init.sh +++ b/src/.docker_modules/sambamba/0.6.9/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/sambamba:0.6.9 -docker build src/.docker_modules/sambamba/0.6.9 -t 'lbmc/sambamba:0.6.9' -docker push lbmc/sambamba:0.6.9 +# docker build src/.docker_modules/sambamba/0.6.9 -t 'lbmc/sambamba:0.6.9' +# docker push lbmc/sambamba:0.6.9 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/sambamba:0.6.9" --push src/.docker_modules/sambamba/0.6.9 diff --git a/src/.docker_modules/samblaster/0.1.24/docker_init.sh b/src/.docker_modules/samblaster/0.1.24/docker_init.sh index b466a20e..319de666 100755 --- a/src/.docker_modules/samblaster/0.1.24/docker_init.sh +++ b/src/.docker_modules/samblaster/0.1.24/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/samblaster:0.1.24 -docker build src/.docker_modules/samblaster/0.1.24 -t 'lbmc/samblaster:0.1.24' -docker push lbmc/samblaster:0.1.24 +# docker build src/.docker_modules/samblaster/0.1.24 -t 'lbmc/samblaster:0.1.24' +# docker push lbmc/samblaster:0.1.24 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/samblaster:0.1.24" --push src/.docker_modules/samblaster/0.1.24 diff --git a/src/.docker_modules/samtools/1.11/docker_init.sh b/src/.docker_modules/samtools/1.11/docker_init.sh index 81715815..273b8472 100755 --- a/src/.docker_modules/samtools/1.11/docker_init.sh +++ b/src/.docker_modules/samtools/1.11/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/samtools:1.11 -docker build src/.docker_modules/samtools/1.11 -t 'lbmc/samtools:1.11' -docker push lbmc/samtools:1.11 +# docker build src/.docker_modules/samtools/1.11 -t 'lbmc/samtools:1.11' +# docker push lbmc/samtools:1.11 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/samtools:1.11" --push src/.docker_modules/samtools/1.11 diff --git a/src/.docker_modules/samtools/1.7/docker_init.sh b/src/.docker_modules/samtools/1.7/docker_init.sh index 6566c7be..5839d04f 100755 --- a/src/.docker_modules/samtools/1.7/docker_init.sh +++ b/src/.docker_modules/samtools/1.7/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/samtools:1.7 -docker build src/.docker_modules/samtools/1.7 -t 'lbmc/samtools:1.7' -docker push lbmc/samtools:1.7 +# docker build src/.docker_modules/samtools/1.7 -t 'lbmc/samtools:1.7' +# docker push lbmc/samtools:1.7 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/samtools:1.7" --push src/.docker_modules/samtools/1.7 diff --git a/src/.docker_modules/sratoolkit/2.8.2/docker_init.sh b/src/.docker_modules/sratoolkit/2.8.2/docker_init.sh index cacdee98..d6207d7e 100755 --- a/src/.docker_modules/sratoolkit/2.8.2/docker_init.sh +++ b/src/.docker_modules/sratoolkit/2.8.2/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/sratoolkit:2.8.2 -docker build src/.docker_modules/sratoolkit/2.8.2 -t 'lbmc/sratoolkit:2.8.2' -docker push lbmc/sratoolkit:2.8.2 +# docker build src/.docker_modules/sratoolkit/2.8.2 -t 'lbmc/sratoolkit:2.8.2' +# docker push lbmc/sratoolkit:2.8.2 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/sratoolkit:2.8.2" --push src/.docker_modules/sratoolkit/2.8.2 diff --git a/src/.docker_modules/star/2.5.3/docker_init.sh b/src/.docker_modules/star/2.5.3/docker_init.sh index f5f3130d..791f2b21 100755 --- a/src/.docker_modules/star/2.5.3/docker_init.sh +++ b/src/.docker_modules/star/2.5.3/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/star:2.7.3a -docker build src/.docker_modules/star/2.7.3a/ -t 'lbmc/star:2.7.3a' -docker push lbmc/star:2.7.3a +# docker build src/.docker_modules/star/2.7.3a/ -t 'lbmc/star:2.7.3a' +# docker push lbmc/star:2.7.3a docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/star:2.7.3a" --push src/.docker_modules/star/2.7.3a diff --git a/src/.docker_modules/star/2.7.3a/docker_init.sh b/src/.docker_modules/star/2.7.3a/docker_init.sh index f5f3130d..791f2b21 100755 --- a/src/.docker_modules/star/2.7.3a/docker_init.sh +++ b/src/.docker_modules/star/2.7.3a/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/star:2.7.3a -docker build src/.docker_modules/star/2.7.3a/ -t 'lbmc/star:2.7.3a' -docker push lbmc/star:2.7.3a +# docker build src/.docker_modules/star/2.7.3a/ -t 'lbmc/star:2.7.3a' +# docker push lbmc/star:2.7.3a docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/star:2.7.3a" --push src/.docker_modules/star/2.7.3a diff --git a/src/.docker_modules/subread/1.6.4/docker_init.sh b/src/.docker_modules/subread/1.6.4/docker_init.sh index 40a14ba5..5d7740e9 100755 --- a/src/.docker_modules/subread/1.6.4/docker_init.sh +++ b/src/.docker_modules/subread/1.6.4/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/subread:1.6.4 -docker build src/.docker_modules/subread/1.6.4 -t 'lbmc/subread:1.6.4' -docker push lbmc/subread:1.6.4 +# docker build src/.docker_modules/subread/1.6.4 -t 'lbmc/subread:1.6.4' +# docker push lbmc/subread:1.6.4 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/subread:1.6.4" --push src/.docker_modules/subread/1.6.4 diff --git a/src/.docker_modules/tophat/2.1.1/docker_init.sh b/src/.docker_modules/tophat/2.1.1/docker_init.sh index e7553d50..f14f6b0b 100755 --- a/src/.docker_modules/tophat/2.1.1/docker_init.sh +++ b/src/.docker_modules/tophat/2.1.1/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/tophat:2.1.1 -docker build src/.docker_modules/tophat/2.1.1 -t 'lbmc/tophat:2.1.1' -docker push lbmc/tophat:2.1.1 +# docker build src/.docker_modules/tophat/2.1.1 -t 'lbmc/tophat:2.1.1' +# docker push lbmc/tophat:2.1.1 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/tophat:2.1.1" --push src/.docker_modules/tophat/2.1.1 diff --git a/src/.docker_modules/trimmomatic/0.36/docker_init.sh b/src/.docker_modules/trimmomatic/0.36/docker_init.sh index 491b91f1..34477452 100755 --- a/src/.docker_modules/trimmomatic/0.36/docker_init.sh +++ b/src/.docker_modules/trimmomatic/0.36/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/trimmomatic:0.36 -docker build src/.docker_modules/trimmomatic/0.36 -t 'lbmc/trimmomatic:0.36' -docker push lbmc/trimmomatic:0.36 +# docker build src/.docker_modules/trimmomatic/0.36 -t 'lbmc/trimmomatic:0.36' +# docker push lbmc/trimmomatic:0.36 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/trimmomatic:0.36" --push src/.docker_modules/trimmomatic/0.36 diff --git a/src/.docker_modules/ucsc/375/docker_init.sh b/src/.docker_modules/ucsc/375/docker_init.sh index d567ce53..5f3b3913 100755 --- a/src/.docker_modules/ucsc/375/docker_init.sh +++ b/src/.docker_modules/ucsc/375/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/ucsc:375 -docker build src/.docker_modules/ucsc/375/ -t 'lbmc/ucsc:375' -docker push lbmc/ucsc:375 +# docker build src/.docker_modules/ucsc/375/ -t 'lbmc/ucsc:375' +# docker push lbmc/ucsc:375 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/ucsc:375" --push src/.docker_modules/ucsc/375 diff --git a/src/.docker_modules/ucsc/400/docker_init.sh b/src/.docker_modules/ucsc/400/docker_init.sh index ca465fac..df1e3e58 100755 --- a/src/.docker_modules/ucsc/400/docker_init.sh +++ b/src/.docker_modules/ucsc/400/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/ucsc:400 -docker build src/.docker_modules/ucsc/400/ -t 'lbmc/ucsc:400' -docker push lbmc/ucsc:400 +# docker build src/.docker_modules/ucsc/400/ -t 'lbmc/ucsc:400' +# docker push lbmc/ucsc:400 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/ucsc:400" --push src/.docker_modules/ucsc/400 diff --git a/src/.docker_modules/ucsc/407/docker_init.sh b/src/.docker_modules/ucsc/407/docker_init.sh index 6672bb86..a68b313b 100755 --- a/src/.docker_modules/ucsc/407/docker_init.sh +++ b/src/.docker_modules/ucsc/407/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/ucsc:407 -docker build src/.docker_modules/ucsc/407/ -t 'lbmc/ucsc:407' -docker push lbmc/ucsc:407 +# docker build src/.docker_modules/ucsc/407/ -t 'lbmc/ucsc:407' +# docker push lbmc/ucsc:407 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/ucsc:407" --push src/.docker_modules/ucsc/407 diff --git a/src/.docker_modules/umi_tools/0.5.4/docker_init.sh b/src/.docker_modules/umi_tools/0.5.4/docker_init.sh index 12bc6c80..4c669f32 100755 --- a/src/.docker_modules/umi_tools/0.5.4/docker_init.sh +++ b/src/.docker_modules/umi_tools/0.5.4/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/umi_tools:1.0.0 -docker build src/.docker_modules/umi_tools/1.0.0/ -t 'lbmc/umi_tools:1.0.0' -docker push lbmc/umi_tools:1.0.0 +# docker build src/.docker_modules/umi_tools/1.0.0/ -t 'lbmc/umi_tools:1.0.0' +# docker push lbmc/umi_tools:1.0.0 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/umi_tools:1.0.0" --push src/.docker_modules/umi_tools/1.0.0 diff --git a/src/.docker_modules/umi_tools/1.0.0/docker_init.sh b/src/.docker_modules/umi_tools/1.0.0/docker_init.sh index 12bc6c80..4c669f32 100755 --- a/src/.docker_modules/umi_tools/1.0.0/docker_init.sh +++ b/src/.docker_modules/umi_tools/1.0.0/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/umi_tools:1.0.0 -docker build src/.docker_modules/umi_tools/1.0.0/ -t 'lbmc/umi_tools:1.0.0' -docker push lbmc/umi_tools:1.0.0 +# docker build src/.docker_modules/umi_tools/1.0.0/ -t 'lbmc/umi_tools:1.0.0' +# docker push lbmc/umi_tools:1.0.0 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/umi_tools:1.0.0" --push src/.docker_modules/umi_tools/1.0.0 diff --git a/src/.docker_modules/urqt/d62c1f8/docker_init.sh b/src/.docker_modules/urqt/d62c1f8/docker_init.sh index bc4cb6db..5bc22f77 100755 --- a/src/.docker_modules/urqt/d62c1f8/docker_init.sh +++ b/src/.docker_modules/urqt/d62c1f8/docker_init.sh @@ -1,5 +1,5 @@ #!/bin/sh docker pull lbmc/urqt:d62c1f8 -docker build src/.docker_modules/urqt/d62c1f8 -t 'lbmc/urqt:d62c1f8' -docker push lbmc/urqt:d62c1f8 +# docker build src/.docker_modules/urqt/d62c1f8 -t 'lbmc/urqt:d62c1f8' +# docker push lbmc/urqt:d62c1f8 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/urqt:d62c1f8" --push src/.docker_modules/urqt/d62c1f8 -- GitLab