From abd775c24bbddc641674e5e6df2fec6eec2a3e50 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Tue, 16 Apr 2019 11:44:12 +0200
Subject: [PATCH] macs2: add in2p3 config # Please enter the commit message for
your changes. Lines starting
---
src/nf_modules/macs2/peak_calling.config | 15 +++++++++++++++
1 file changed, 15 insertions(+)
diff --git a/src/nf_modules/macs2/peak_calling.config b/src/nf_modules/macs2/peak_calling.config
index fe712a6a..2eaed2e7 100644
--- a/src/nf_modules/macs2/peak_calling.config
+++ b/src/nf_modules/macs2/peak_calling.config
@@ -33,4 +33,19 @@ profiles {
}
}
}
+ ccin2p3 {
+ process{
+ withName: peak_calling {
+ beforeScript = "PATH=/sps/lbmc/common/nextflow/src/singularity_modules/macs2/2.1.2/:/usr/bin:$PATH"
+ scratch = true
+ stageInMode = "copy"
+ stageOutMode = "rsync"
+ executor = "sge"
+ clusterOptions = "-P P_lbmc -l os=cl7 -l sps=1 -r n"
+ cpus = 1
+ memory = "10GB"
+ time = "24h"
+ }
+ }
+ }
}
--
GitLab