From aaec95a69d7dcc3480a1094ebd170feb72d13296 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Tue, 2 Nov 2021 14:45:01 +0100
Subject: [PATCH] multiqc: better handling of List as input
---
src/nf_modules/multiqc/main.nf | 11 ++++++++---
1 file changed, 8 insertions(+), 3 deletions(-)
diff --git a/src/nf_modules/multiqc/main.nf b/src/nf_modules/multiqc/main.nf
index ee3611da..7b4d09a0 100644
--- a/src/nf_modules/multiqc/main.nf
+++ b/src/nf_modules/multiqc/main.nf
@@ -31,14 +31,19 @@ workflow multiqc {
main:
report
.map{it ->
- if (it.size() > 1){
- it[1]
+ if (it instanceof List){
+ if(it.size() > 1) {
+ it[1]
+ } else {
+ it[0]
+ }
} else {
it
}
}
- .flatten()
+ .view()
.unique()
+ .flatten()
.set { report_cleaned }
multiqc_default(report_cleaned.collect())
--
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