From a9f4a856502ff63c774aafd2e9c97c1835c3b99f Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Tue, 13 Jul 2021 11:23:27 +0200
Subject: [PATCH] kb: go back to working 0.26.0 version
---
src/.docker_modules/kb/0.26.3/Dockerfile | 3 +--
src/nf_modules/kb/main.nf | 2 +-
2 files changed, 2 insertions(+), 3 deletions(-)
diff --git a/src/.docker_modules/kb/0.26.3/Dockerfile b/src/.docker_modules/kb/0.26.3/Dockerfile
index 9249cfc3..5cd35dfa 100644
--- a/src/.docker_modules/kb/0.26.3/Dockerfile
+++ b/src/.docker_modules/kb/0.26.3/Dockerfile
@@ -3,8 +3,7 @@ FROM python:3.9-slim
ENV KB_VERSION="0.26.3"
RUN apt update && apt install -y procps make gcc zlib1g-dev libbz2-dev libcurl4 liblzma-dev \
- && pip install --upgrade pip \
- && pip3 install anndata h5py Jinja2 loompy nbconvert nbformat ngs-tools numpy pandas plotly scanpy scikit-learn tqdm \
+ && pip3 install pysam anndata h5py Jinja2 loompy nbconvert nbformat ngs-tools numpy pandas plotly scanpy scikit-learn tqdm \
&& pip3 install kb-python==${KB_VERSION} gffutils
COPY t2g.py /usr/bin/
diff --git a/src/nf_modules/kb/main.nf b/src/nf_modules/kb/main.nf
index f7cf0e08..a6cbfa75 100644
--- a/src/nf_modules/kb/main.nf
+++ b/src/nf_modules/kb/main.nf
@@ -1,4 +1,4 @@
-version = "0.26.3"
+version = "0.26.0"
container_url = "lbmc/kb:${version}"
params.index_fasta = ""
--
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