diff --git a/src/.docker_modules/kb/0.26.3/Dockerfile b/src/.docker_modules/kb/0.26.3/Dockerfile index 9249cfc3729b499d9943a08d69119688eb5a154d..5cd35dfae7d474b25223ebeca80fe6adada91db3 100644 --- a/src/.docker_modules/kb/0.26.3/Dockerfile +++ b/src/.docker_modules/kb/0.26.3/Dockerfile @@ -3,8 +3,7 @@ FROM python:3.9-slim ENV KB_VERSION="0.26.3" RUN apt update && apt install -y procps make gcc zlib1g-dev libbz2-dev libcurl4 liblzma-dev \ - && pip install --upgrade pip \ - && pip3 install anndata h5py Jinja2 loompy nbconvert nbformat ngs-tools numpy pandas plotly scanpy scikit-learn tqdm \ + && pip3 install pysam anndata h5py Jinja2 loompy nbconvert nbformat ngs-tools numpy pandas plotly scanpy scikit-learn tqdm \ && pip3 install kb-python==${KB_VERSION} gffutils COPY t2g.py /usr/bin/ diff --git a/src/nf_modules/kb/main.nf b/src/nf_modules/kb/main.nf index f7cf0e0841a65ebf692946a39cf67eb2f4f9f963..a6cbfa759925b1bdff0abde20f1942ca40a22b7a 100644 --- a/src/nf_modules/kb/main.nf +++ b/src/nf_modules/kb/main.nf @@ -1,4 +1,4 @@ -version = "0.26.3" +version = "0.26.0" container_url = "lbmc/kb:${version}" params.index_fasta = ""